NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11750.1 Public Homo sapiens 17 MFSD11 24 110 108 CCDS HistoryNCBI Gene:79157Re-query CCDS DB by CCDS ID:11750.1Re-query CCDS DB by GeneID:79157See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11750.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336509.8 ENSP00000337240.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336509.8Link to Ensembl Protein Viewer:ENSP00000337240.3Re-query CCDS DB by Nucleotide ID:ENST00000336509Re-query CCDS DB by Protein ID:ENSP00000337240
Original member Current member EBI ENST00000588460.6 ENSP00000464932.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588460.6Link to Ensembl Protein Viewer:ENSP00000464932.1Re-query CCDS DB by Nucleotide ID:ENST00000588460Re-query CCDS DB by Protein ID:ENSP00000464932
Original member Current member EBI ENST00000586622.5 ENSP00000466613.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586622.5Link to Ensembl Protein Viewer:ENSP00000466613.1Re-query CCDS DB by Nucleotide ID:ENST00000586622Re-query CCDS DB by Protein ID:ENSP00000466613
Original member Current member EBI ENST00000590514.5 ENSP00000468309.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590514.5Link to Ensembl Protein Viewer:ENSP00000468309.1Re-query CCDS DB by Nucleotide ID:ENST00000590514Re-query CCDS DB by Protein ID:ENSP00000468309
Original member Current member EBI ENST00000621483.4 ENSP00000485005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621483.4Link to Ensembl Protein Viewer:ENSP00000485005.1Re-query CCDS DB by Nucleotide ID:ENST00000621483Re-query CCDS DB by Protein ID:ENSP00000485005
Original member Current member EBI ENST00000685175.1 ENSP00000508960.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685175.1Link to Ensembl Protein Viewer:ENSP00000508960.1Re-query CCDS DB by Nucleotide ID:ENST00000685175Re-query CCDS DB by Protein ID:ENSP00000508960
Original member Current member NCBI NM_001242532.5 NP_001229461.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242532.5Link to Protein Sequence:NP_001229461.1Re-query CCDS DB by Nucleotide ID:NM_001242532Re-query CCDS DB by Protein ID:NP_001229461Link to BLAST:NP_001229461.1
Original member Current member NCBI NM_001242533.3 NP_001229462.1 Accepted alive Link to Nucleotide Sequence:NM_001242533.3Link to Protein Sequence:NP_001229462.1Re-query CCDS DB by Nucleotide ID:NM_001242533Re-query CCDS DB by Protein ID:NP_001229462Link to BLAST:NP_001229462.1
Original member Current member NCBI NM_001242534.3 NP_001229463.1 Accepted alive Link to Nucleotide Sequence:NM_001242534.3Link to Protein Sequence:NP_001229463.1Re-query CCDS DB by Nucleotide ID:NM_001242534Re-query CCDS DB by Protein ID:NP_001229463Link to BLAST:NP_001229463.1
Original member Current member NCBI NM_001242535.3 NP_001229464.1 Accepted alive Link to Nucleotide Sequence:NM_001242535.3Link to Protein Sequence:NP_001229464.1Re-query CCDS DB by Nucleotide ID:NM_001242535Re-query CCDS DB by Protein ID:NP_001229464Link to BLAST:NP_001229464.1
Original member Current member NCBI NM_001353017.2 NP_001339946.1 Accepted alive Link to Nucleotide Sequence:NM_001353017.2Link to Protein Sequence:NP_001339946.1Re-query CCDS DB by Nucleotide ID:NM_001353017Re-query CCDS DB by Protein ID:NP_001339946Link to BLAST:NP_001339946.1
Original member Current member NCBI NM_001353018.2 NP_001339947.1 Accepted alive Link to Nucleotide Sequence:NM_001353018.2Link to Protein Sequence:NP_001339947.1Re-query CCDS DB by Nucleotide ID:NM_001353018Re-query CCDS DB by Protein ID:NP_001339947Link to BLAST:NP_001339947.1
Original member Current member NCBI NM_001353019.2 NP_001339948.1 Accepted alive Link to Nucleotide Sequence:NM_001353019.2Link to Protein Sequence:NP_001339948.1Re-query CCDS DB by Nucleotide ID:NM_001353019Re-query CCDS DB by Protein ID:NP_001339948Link to BLAST:NP_001339948.1
Original member Current member NCBI NM_024311.5 NP_077287.1 Accepted alive Link to Nucleotide Sequence:NM_024311.5Link to Protein Sequence:NP_077287.1Re-query CCDS DB by Nucleotide ID:NM_024311Re-query CCDS DB by Protein ID:NP_077287Link to BLAST:NP_077287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229461.1 449 O43934-1 449 100% 0 0
NP_001229462.1 449 O43934-1 449 100% 0 0
NP_001229463.1 449 O43934-1 449 100% 0 0
NP_001229464.1 449 O43934-1 449 100% 0 0
NP_001339946.1 449 O43934-1 449 100% 0 0
NP_001339947.1 449 O43934-1 449 100% 0 0
NP_001339948.1 449 O43934-1 449 100% 0 0
NP_077287.1 449 O43934-1 449 100% 0 0

Chromosomal Locations for CCDS 11750.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76738353 76738448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76738938 76738993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76740957 76741064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76741969 76742048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76742177 76742273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76743398 76743456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76744322 76744466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76754047 76754087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76767386 76767451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76769746 76769871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76774997 76775171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76776406 76776541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76778188 76778352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGTCCCCGGAATCTAAAAAGCTTTTCAACATCATTATTTTAGGAGTTGCCTTTATGTTTATGTTCACTG
CCTTTCAAACTTGTGGAAATGTGGCGCAAACTGTCATCAGGAGCTTAAATAGGACAGATTTTCACGGCAG
TGGATATACCAGCATGGCTATTATCTATGGAGTGTTCTCTGCTTCAAATTTGATTACACCGTCAGTGGTT
GCCATTGTAGGACCTCAACTCTCTATGTTTGCCAGTGGTTTATTTTACAGCATGTACATTGCCGTTTTCA
TCCAGCCTTTCCCGTGGTCCTTCTACACAGCCTCTGTTTTCATTGGAATTGCTGCTGCTGTGCTTTGGAC
AGCACAAGGAAACTGCCTGACAATCAATTCGGATGAGCACAGCATTGGGAGAAACAGTGGGATTTTCTGG
GCACTTCTGCAGTCTAGCTTGTTCTTTGGAAATCTCTACATATATTTTGCCTGGCAAGGGAAAACTCAGA
TATCAGAGAGTGACCGAAGAACAGTGTTTATTGCCCTAACGGTGATTAGCCTTGTGGGGACAGTTCTATT
CTTTCTCATTCGGAAACCAGATTCTGAAAATGTCCTAGGAGAAGATGAGTCTTCTGATGACCAGGACATG
GAAGTCAACGAGTCTGCCCAGAACAATCTGACAAAGGCAGTAGATGCTTTTAAAAAGTCTTTTAAGTTAT
GTGTCACCAAGGAGATGCTCCTTCTTAGTATTACAACTGCTTATACAGGTCTGGAATTAACTTTCTTCTC
TGGTGTATATGGAACCTGTATTGGTGCTACAAATAAATTTGGAGCAGAAGAGAAAAGCCTTATTGGACTT
TCTGGCATTTTCATCGGCATTGGAGAAATTTTAGGTGGAAGCCTCTTCGGCCTGCTGAGCAAGAACAATC
GTTTTGGTAGAAATCCAGTTGTGCTGTTGGGCATCCTGGTGCACTTCATAGCTTTTTATCTAATATTTCT
CAACATGCCTGGAGATGCCCCGATTGCTCCTGTTAAAGGAACTGACAGCAGTGCTTACATCAAATCCAGC
AAAGAAGTTGCCATTCTCTGCAGTTTTCTGTTGGGCCTTGGAGACAGCTGCTTTAATACCCAGCTGCTTA
GTATCTTGGGCTTTCTGTATTCTGAAGACAGCGCCCCAGCATTTGCCATCTTCAAGTTTGTTCAGTCTAT
TTGCGCAGCCGTGGCATTTTTCTACAGCAACTACCTTCTCCTTCACTGGCAACTCCTGGTCATGGTGATA
TTTGGGTTTTTTGGAACAATTTCTTTCTTCACTGTGGAATGGGAAGCTGCCGCCTTTGTAGCCCGCGGCT
CTGACTACCGAAGTATCTGA

Translation (449 aa):
MSPESKKLFNIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSVV
AIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHSIGRNSGIFW
ALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDM
EVNESAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFFSGVYGTCIGATNKFGAEEKSLIGL
SGIFIGIGEILGGSLFGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAYIKSS
KEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVI
FGFFGTISFFTVEWEAAAFVARGSDYRSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH