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Report for CCDS83487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83487.1 Public Homo sapiens X CUL4B 24 110 108 CCDS HistoryNCBI Gene:8450Re-query CCDS DB by CCDS ID:83487.1Re-query CCDS DB by GeneID:8450See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336592.11 ENSP00000338919.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336592.11Link to Ensembl Protein Viewer:ENSP00000338919.6Re-query CCDS DB by Nucleotide ID:ENST00000336592Re-query CCDS DB by Protein ID:ENSP00000338919
Original member Current member NCBI NM_001330624.2 NP_001317553.1 Accepted alive Link to Nucleotide Sequence:NM_001330624.2Link to Protein Sequence:NP_001317553.1Re-query CCDS DB by Nucleotide ID:NM_001330624Re-query CCDS DB by Protein ID:NP_001317553Link to BLAST:NP_001317553.1

Chromosomal Locations for CCDS 83487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120526761 120526856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120530102 120530254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120532422 120532594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120534481 120534586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120535830 120535943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120536927 120537034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120538124 120538209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120538660 120538770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120539268 120539372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120540370 120540562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120541602 120541720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120542966 120543033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120543727 120543809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120544114 120544203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120544481 120544643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120545444 120545517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120546547 120546616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120547136 120547239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120557924 120558039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120560083 120560625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120561372 120561399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGAAAAGTGTCTGCCCAGTCACTTCCGGTTTTTCTTCCCCCAGTCCCTCAGCTGCTGCTGCTGCTCAGG
AGGTCAGATCTGCCACTGATGGTAATACCAGCACCACTCCGCCCACCTCTGCCAAGAAGAGAAAGTTAAA
CAGCAGCAGCAGTAGCAGCAGTAACAGTAGTAACGAGAGAGAAGACTTTGATTCCACCTCTTCCTCCTCT
TCCACTCCTCCTTTACAACCCAGGGATTCGGCATCCCCTTCAACCTCGTCCTTCTGCCTGGGGGTTTCAG
TGGCTGCTTCCAGCCACGTACCGATACAGAAGAAGCTGCGTTTTGAAGACACCCTGGAGTTTGTAGGGTT
TGATGCGAAGATGGCTGAGGAATCCTCCTCCTCCTCCTCCTCATCTTCACCAACTGCTGCAACATCTCAG
CAGCAGCAACTTAAAAATAAGAGTATATTAATCTCTTCTGTGGCTTCGGTGCATCATGCAAACGGCCTAG
CCAAATCTTCTACCACCGTCTCTAGCTTTGCTAACAGCAAACCTGGCTCTGCTAAGAAGTTAGTGATCAA
GAACTTTAAAGATAAGCCTAAATTACCAGAAAACTACACAGATGAAACCTGGCAAAAACTGAAAGAAGCA
GTGGAAGCTATTCAGAATAGTACTTCAATTAAGTACAATTTAGAAGAACTCTACCAGGCTGTAGAAAATC
TCTGTTCTTACAAGATTTCTGCAAACTTGTACAAACAGCTGAGACAGATCTGCGAAGATCACATCAAAGC
ACAGATTCATCAATTCAGAGAGGATTCATTGGATAGCGTTCTTTTTTTAAAGAAGATTGATAGATGCTGG
CAAAACCATTGCAGACAAATGATCATGATCAGGAGCATTTTTTTGTTTCTGGATAGAACTTACGTTCTTC
AGAATTCAATGCTACCCTCCATTTGGGACATGGGACTGGAGTTATTTAGGGCTCATATTATAAGTGATCA
GAAAGTGCAGAATAAGACAATTGATGGCATTCTTCTCTTGATTGAGAGGGAAAGGAATGGTGAAGCAATT
GATAGAAGTTTACTTCGAAGCCTTTTAAGCATGCTGTCTGATTTGCAAATTTATCAAGATTCTTTTGAAC
AACGATTTTTGGAAGAAACTAACCGGCTCTATGCAGCTGAAGGCCAAAAATTAATGCAAGAAAGAGAGGT
TCCTGAATATCTACATCATGTTAACAAACGTCTAGAAGAAGAAGCAGACAGACTTATTACTTACTTAGAT
CAGACCACCCAGAAGTCATTAATTGCTACTGTAGAAAAACAACTTCTAGGTGAACACTTAACAGCAATTC
TTCAGAAAGGTTTAAATAACCTCCTTGATGAAAACCGAATTCAAGATTTGTCTCTTCTGTATCAGCTCTT
CAGTAGAGTTCGAGGTGGAGTTCAGGTTCTTTTGCAGCAGTGGATCGAATATATCAAGGCATTTGGCAGC
ACTATTGTAATTAATCCTGAAAAAGATAAAACCATGGTTCAAGAATTGCTGGATTTTAAAGATAAGGTTG
ACCATATAATTGATATCTGCTTTCTGAAGAATGAGAAATTTATCAATGCCATGAAAGAAGCATTTGAAAC
GTTCATTAACAAAAGACCAAATAAACCAGCTGAACTTATAGCTAAGTATGTAGATTCAAAACTTCGTGCA
GGCAACAAAGAAGCTACAGATGAAGAACTTGAGAAAATGTTGGATAAAATTATGATCATATTTAGATTTA
TCTATGGCAAGGATGTTTTTGAGGCCTTCTATAAGAAAGATTTAGCCAAGCGCCTGTTAGTCGGAAAGAG
TGCATCTGTAGATGCTGAAAAATCAATGCTGTCCAAACTTAAACATGAATGCGGAGCTGCTTTCACCAGC
AAACTTGAAGGAATGTTTAAAGACATGGAACTTTCTAAAGACATCATGATTCAGTTCAAACAGTATATGC
AGAATCAGAATGTTCCGGGAAATATTGAGTTAACTGTGAATATCCTGACAATGGGCTATTGGCCGACATA
TGTGCCTATGGAAGTTCATTTACCACCAGAGATGGTAAAACTTCAGGAGATTTTCAAGACATTTTACCTA
GGCAAACATAGTGGCAGGAAACTTCAGTGGCAGTCAACCCTAGGACACTGTGTGTTAAAAGCAGAATTTA
AAGAGGGTAAAAAGGAACTCCAGGTCTCTCTTTTTCAAACACTGGTGCTGCTAATGTTTAATGAGGGAGA
GGAGTTCAGTTTAGAAGAGATCAAGCAGGCAACTGGAATAGAGGATGGAGAGTTAAGGAGAACACTGCAG
TCATTAGCCTGTGGCAAAGCTAGAGTTCTGGCGAAAAATCCAAAGGGCAAAGACATTGAAGATGGTGACA
AGTTCATTTGTAATGATGATTTCAAACATAAACTTTTCAGGATAAAGATCAATCAAATCCAGATGAAAGA
AACGGTTGAAGAACAAGCAAGCACTACAGAAAGAGTATTTCAAGACAGACAGTATCAAATTGATGCTGCA
ATTGTTCGAATTATGAAGATGAGAAAGACACTTAGCCACAATCTCCTTGTTTCAGAAGTGTACAACCAGT
TGAAATTTCCAGTAAAGCCTGCTGATCTTAAGAAGAGAATAGAATCTTTAATTGACCGGGACTACATGGA
AAGAGATAAAGAAAATCCAAACCAGTACAACTATATTGCATAG

Translation (900 aa):
MKSVCPVTSGFSSPSPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNEREDFDSTSSSS
STPPLQPRDSASPSTSSFCLGVSVAASSHVPIQKKLRFEDTLEFVGFDAKMAEESSSSSSSSSPTAATSQ
QQQLKNKSILISSVASVHHANGLAKSSTTVSSFANSKPGSAKKLVIKNFKDKPKLPENYTDETWQKLKEA
VEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCW
QNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAI
DRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLD
QTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGS
TIVINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPNKPAELIAKYVDSKLRA
GNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTS
KLEGMFKDMELSKDIMIQFKQYMQNQNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYL
GKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQ
SLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAA
IVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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