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Report for CCDS45977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45977.1 Public Homo sapiens 19 PRKCSH 24 110 108 CCDS HistoryNCBI Gene:5589Re-query CCDS DB by CCDS ID:45977.1Re-query CCDS DB by GeneID:5589See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45977.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591462.6 ENSP00000465489.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591462.6Link to Ensembl Protein Viewer:ENSP00000465489.1Re-query CCDS DB by Nucleotide ID:ENST00000591462Re-query CCDS DB by Protein ID:ENSP00000465489
Original member Current member EBI ENST00000587327.5 ENSP00000466012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000587327.5Link to Ensembl Protein Viewer:ENSP00000466012.1Re-query CCDS DB by Nucleotide ID:ENST00000587327Re-query CCDS DB by Protein ID:ENSP00000466012
Original member Current member NCBI NM_001001329.3 NP_001001329.1 Accepted alive Link to Nucleotide Sequence:NM_001001329.3Link to Protein Sequence:NP_001001329.1Re-query CCDS DB by Nucleotide ID:NM_001001329Re-query CCDS DB by Protein ID:NP_001001329Link to BLAST:NP_001001329.1
Original member Current member NCBI NM_001289102.2 NP_001276031.1 Accepted alive Link to Nucleotide Sequence:NM_001289102.2Link to Protein Sequence:NP_001276031.1Re-query CCDS DB by Nucleotide ID:NM_001289102Re-query CCDS DB by Protein ID:NP_001276031Link to BLAST:NP_001276031.1
Original member Current member NCBI NM_001379609.1 NP_001366538.1 Accepted alive Link to Nucleotide Sequence:NM_001379609.1Link to Protein Sequence:NP_001366538.1Re-query CCDS DB by Nucleotide ID:NM_001379609Re-query CCDS DB by Protein ID:NP_001366538Link to BLAST:NP_001366538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001329.1 525 P14314-2 525 100% 0 0
NP_001276031.1 525 P14314-2 525 100% 0 0
NP_001366538.1 525 P14314-2 525 100% 0 0

Chromosomal Locations for CCDS 45977.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11436118 11436196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11436389 11436505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11437876 11437971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11438067 11438124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11441240 11441357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11442386 11442515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11445389 11445473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11446272 11446350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11447074 11447160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11447439 11447618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11447723 11447789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11448222 11448291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11448540 11448629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11448914 11448988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11449076 11449175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11449266 11449412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGCTGTTGCCGCTGCTGCTGCTGCTACCCATGTGCTGGGCCGTGGAGGTCAAGAGGCCCCGGGGCGTCT
CCCTCACCAATCATCACTTCTACGATGAGTCCAAGCCTTTCACCTGCCTGGACGGTTCGGCCACCATCCC
ATTTGATCAGGTCAACGATGACTATTGCGACTGCAAAGATGGCTCTGACGAGCCAGGCACGGCTGCCTGT
CCTAATGGCAGCTTCCACTGCACCAACACTGGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACG
ATGGTGTTTGTGACTGCTGCGATGGAACAGACGAGTACAACAGCGGCGTCATCTGTGAGAACACCTGCAA
AGAGAAGGGCCGTAAGGAGAGAGAGTCCCTGCAGCAGATGGCCGAGGTCACCCGCGAAGGGTTCCGTCTG
AAGAAGATCCTTATTGAGGACTGGAAGAAGGCACGGGAGGAGAAGCAGAAAAAGCTCATTGAGCTACAGG
CTGGGAAGAAGTCTCTGGAAGACCAGGTGGAGATGCTGCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGA
GAGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGAGCAGCTGGCTGCTGCCAAGGCCCAACAGGAG
CAGGAGCTGGCGGCTGATGCCTTCAAGGAGCTGGATGATGACATGGACGGGACGGTCTCGGTGACTGAGC
TGCAGACTCACCCGGAGCTGGACACAGATGGGGATGGGGCGTTGTCAGAAGCGGAAGCTCAGGCCCTCCT
CAGTGGGGACACACAGACAGACGCCACCTCTTTCTACGACCGCGTCTGGGCCGCCATCAGGGACAAGTAC
CGGTCCGAGGCACTGCCCACCGACCTTCCAGCACCTTCTGCCCCTGACTTGACGGAGCCCAAGGAGGAGC
AGCCGCCAGTGCCCTCGTCGCCCACAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGCTGA
AGAAGAGGAGGAGGAGGAGGATTCCGAGGTGCAGGGGGAGCAGCCCAAGCCGGCCAGCCCTGCTGAGGAA
GACAAAATGCCGCCCTACGACGAGCAGACGCAGGCCTTCATCGATGCTGCCCAGGAGGCCCGCAACAAGT
TCGAGGAGGCCGAGCGGTCGCTGAAGGACATGGAGGAGTCCATCAGGAACCTGGAGCAAGAGATTTCTTT
TGACTTTGGCCCCAACGGGGAGTTTGCTTACCTGTACAGCCAGTGCTACGAGCTCACCACCAACGAATAC
GTCTACCGCCTCTGCCCCTTCAAGCTTGTCTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGCCTTG
GCACCTGGGGCTCATGGATTGGCCCCGACCACGACAAGTTCAGTGCCATGAAGTATGAGCAAGGCACGGG
CTGCTGGCAGGGCCCCAACCGCTCCACCACCGTGCGCCTCCTGTGCGGGAAAGAGACCATGGTGACCAGC
ACCACAGAGCCCAGTCGCTGCGAGTACCTCATGGAGCTGATGACGCCAGCCGCCTGCCCGGAGCCACCGC
CTGAAGCACCCACCGAAGACGACCATGACGAGCTCTAG

Translation (525 aa):
MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAAC
PNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREGFRL
KKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVKEEAEKPEREAKEQHQKLWEEQLAAAKAQQE
QELAADAFKELDDDMDGTVSVTELQTHPELDTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKY
RSEALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKPASPAEE
DKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEY
VYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVTS
TTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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