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Report for CCDS82865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82865.1 Public Homo sapiens 3 SSR3 24 110 108 CCDS HistoryNCBI Gene:6747Re-query CCDS DB by CCDS ID:82865.1Re-query CCDS DB by GeneID:6747See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000463503.5 ENSP00000417306.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000463503.5Link to Ensembl Protein Viewer:ENSP00000417306.1Re-query CCDS DB by Nucleotide ID:ENST00000463503Re-query CCDS DB by Protein ID:ENSP00000417306
Original member Current member EBI ENST00000496050.1 ENSP00000420087.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000496050.1Link to Ensembl Protein Viewer:ENSP00000420087.1Re-query CCDS DB by Nucleotide ID:ENST00000496050Re-query CCDS DB by Protein ID:ENSP00000420087
Original member Current member NCBI NM_001308204.2 NP_001295133.1 Accepted alive Link to Nucleotide Sequence:NM_001308204.2Link to Protein Sequence:NP_001295133.1Re-query CCDS DB by Nucleotide ID:NM_001308204Re-query CCDS DB by Protein ID:NP_001295133Link to BLAST:NP_001295133.1
Original member Current member NCBI NM_001308205.2 NP_001295134.1 Accepted alive Link to Nucleotide Sequence:NM_001308205.2Link to Protein Sequence:NP_001295134.1Re-query CCDS DB by Nucleotide ID:NM_001308205Re-query CCDS DB by Protein ID:NP_001295134Link to BLAST:NP_001295134.1

Chromosomal Locations for CCDS 82865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 156543203 156543269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156544308 156544439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156548905 156549003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156553655 156553758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGATCTTATTCAGTCTGCTGTTTTGTATAGTGTGATGACCCTAGTAAGCACATATTTGGTAGCCTTTG
CATACAAGAATGTGAAATTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAGGATGCTGTTTCCAAAGA
AGTGACTCGAAAACTTTCTGAAGCTGATAATAGAAAGATGTCTCGGAAGGAGAAAGATGAAAGAATCTTG
TGGAAGAAGAATGAAGTTGCTGATTATGAAGCTACAACATTTTCCATCTTCTATAACAACACTCTGTTCC
TGGTCGTGGTCATTGTTGCTTCCTTCTTCATATTGAAGAACTTCAACCCCACAGTGAACTACATATTGTC
CATAAGTGCTTCATCAGGACTCATCGCCCTCCTGTCTACTGGCTCCAAATAG

Translation (133 aa):
MDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERIL
WKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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