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Report for CCDS43069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43069.1 Public Homo sapiens 3 CX3CR1 24 110 108 CCDS HistoryNCBI Gene:1524Re-query CCDS DB by CCDS ID:43069.1Re-query CCDS DB by GeneID:1524See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43069.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399220.3 ENSP00000382166.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399220.3Link to Ensembl Protein Viewer:ENSP00000382166.3Re-query CCDS DB by Nucleotide ID:ENST00000399220Re-query CCDS DB by Protein ID:ENSP00000382166
Original member Current member EBI ENST00000541347.5 ENSP00000439140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541347.5Link to Ensembl Protein Viewer:ENSP00000439140.1Re-query CCDS DB by Nucleotide ID:ENST00000541347Re-query CCDS DB by Protein ID:ENSP00000439140
Original member Current member EBI ENST00000542107.5 ENSP00000444928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542107.5Link to Ensembl Protein Viewer:ENSP00000444928.1Re-query CCDS DB by Nucleotide ID:ENST00000542107Re-query CCDS DB by Protein ID:ENSP00000444928
Original member Current member NCBI NM_001171171.2 NP_001164642.1 Accepted alive Link to Nucleotide Sequence:NM_001171171.2Link to Protein Sequence:NP_001164642.1Re-query CCDS DB by Nucleotide ID:NM_001171171Re-query CCDS DB by Protein ID:NP_001164642Link to BLAST:NP_001164642.1
Original member Current member NCBI NM_001171172.2 NP_001164643.1 Accepted alive Link to Nucleotide Sequence:NM_001171172.2Link to Protein Sequence:NP_001164643.1Re-query CCDS DB by Nucleotide ID:NM_001171172Re-query CCDS DB by Protein ID:NP_001164643Link to BLAST:NP_001164643.1
Original member Current member NCBI NM_001337.4 NP_001328.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001337.4Link to Protein Sequence:NP_001328.1Re-query CCDS DB by Nucleotide ID:NM_001337Re-query CCDS DB by Protein ID:NP_001328Link to BLAST:NP_001328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164642.1 355 P49238-1 355 100% 0 0
NP_001164643.1 355 P49238-1 355 100% 0 0
NP_001328.1 355 P49238-1 355 100% 0 0

Chromosomal Locations for CCDS 43069.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39265442 39266509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGATCAGTTCCCTGAATCAGTGACAGAAAACTTTGAGTACGATGATTTGGCTGAGGCCTGTTATATTG
GGGACATCGTGGTCTTTGGGACTGTGTTCCTGTCCATATTCTACTCCGTCATCTTTGCCATTGGCCTGGT
GGGAAATTTGTTGGTAGTGTTTGCCCTCACCAACAGCAAGAAGCCCAAGAGTGTCACCGACATTTACCTC
CTGAACCTGGCCTTGTCTGATCTGCTGTTTGTAGCCACTTTGCCCTTCTGGACTCACTATTTGATAAATG
AAAAGGGCCTCCACAATGCCATGTGCAAATTCACTACCGCCTTCTTCTTCATCGGCTTTTTTGGAAGCAT
ATTCTTCATCACCGTCATCAGCATTGATAGGTACCTGGCCATCGTCCTGGCCGCCAACTCCATGAACAAC
CGGACCGTGCAGCATGGCGTCACCATCAGCCTAGGCGTCTGGGCAGCAGCCATTTTGGTGGCAGCACCCC
AGTTCATGTTCACAAAGCAGAAAGAAAATGAATGCCTTGGTGACTACCCCGAGGTCCTCCAGGAAATCTG
GCCCGTGCTCCGCAATGTGGAAACAAATTTTCTTGGCTTCCTACTCCCCCTGCTCATTATGAGTTATTGC
TACTTCAGAATCATCCAGACGCTGTTTTCCTGCAAGAACCACAAGAAAGCCAAAGCCATTAAACTGATCC
TTCTGGTGGTCATCGTGTTTTTCCTCTTCTGGACACCCTACAACGTTATGATTTTCCTGGAGACGCTTAA
GCTCTATGACTTCTTTCCCAGTTGTGACATGAGGAAGGATCTGAGGCTGGCCCTCAGTGTGACTGAGACG
GTTGCATTTAGCCATTGTTGCCTGAATCCTCTCATCTATGCATTTGCTGGGGAGAAGTTCAGAAGATACC
TTTACCACCTGTATGGGAAATGCCTGGCTGTCCTGTGTGGGCGCTCAGTCCACGTTGATTTCTCCTCATC
TGAATCACAAAGGAGCAGGCATGGAAGTGTTCTGAGCAGCAATTTTACTTACCACACGAGTGATGGAGAT
GCATTGCTCCTTCTCTGA

Translation (355 aa):
MDQFPESVTENFEYDDLAEACYIGDIVVFGTVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYL
LNLALSDLLFVATLPFWTHYLINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNN
RTVQHGVTISLGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKLYDFFPSCDMRKDLRLALSVTET
VAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQRSRHGSVLSSNFTYHTSDGD
ALLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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