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Report for CCDS34283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34283.1 Public Homo sapiens 5 FAM200C 24 110 108 CCDS HistoryNCBI Gene:63920Re-query CCDS DB by CCDS ID:34283.1Re-query CCDS DB by GeneID:63920See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34283.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408953.4 ENSP00000386184.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408953.4Link to Ensembl Protein Viewer:ENSP00000386184.3Re-query CCDS DB by Nucleotide ID:ENST00000408953Re-query CCDS DB by Protein ID:ENSP00000386184
Original member Current member EBI ENST00000523213.1 ENSP00000428831.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523213.1Link to Ensembl Protein Viewer:ENSP00000428831.1Re-query CCDS DB by Nucleotide ID:ENST00000523213Re-query CCDS DB by Protein ID:ENSP00000428831
Original member Current member NCBI NM_001303251.2 NP_001290180.1 Accepted alive Link to Nucleotide Sequence:NM_001303251.2Link to Protein Sequence:NP_001290180.1Re-query CCDS DB by Nucleotide ID:NM_001303251Re-query CCDS DB by Protein ID:NP_001290180Link to BLAST:NP_001290180.1
Original member Current member NCBI NM_022090.5 NP_071373.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022090.5Link to Protein Sequence:NP_071373.2Re-query CCDS DB by Nucleotide ID:NM_022090Re-query CCDS DB by Protein ID:NP_071373Link to BLAST:NP_071373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290180.1 594 Q8IZ13 594 100% 0 0
NP_071373.2 594 Q8IZ13 594 100% 0 0

Chromosomal Locations for CCDS 34283.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160393706 160395490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGTCGAAGAAACGCAAATGGGATGATGACTATGTTCGCTACTGGTTCACCTGTACAACGGAAGTAGATG
GAACTCAGCGTCCACAGTGTGTGTTGTGTAACTCAGTATTTTCAAATGCTGACCTCAGACCATCAAAACT
GTCAGACCATTTTAACAGACAGCATGGTGGTGTAGCTGGGCATGATCTCAATAGCCTGAAGCATATGCCA
GCACCATCTGATCAGAGTGAAACCTTGAAAGCATTTGGAGTTGCATCTCATGAGGATACTTTATTACAAG
CATCGTATCAATTTGCGTATTTATGTGCCAAGGAGAAGAATCCTCATACAGTAGCTGAAAAGTTAGTGAA
ACCTTGTGCACTGGAAATAGCACAAATAGTTTTGGGACCAGATGCACAAAAAAAGCTTCAGCAGGTACCC
TTATCAGATGATGTGATCCATTCTAGAATTGATGAAATGAGCCAGGATATCTTACAGCAAGTTCTAGAAG
ATATCAAAGCCAGTCCTCTTAAAGTGGGTATTCAGCTTGCTGAGACAACTGACATGGATGACTGCAGTCA
GCTAATGGCATTTGTGCGCTATATAAAAGAAAGAGAGATCGTAGAAGAATTTCTCTTCTGTGAACCATTG
CAGCTATCCATGAAAGGAATAGATGTGTTCAATCTCTTCAGAGACTTCTTTCTGAAGCATAAGATAGCAC
TTGATGTATGTGGCTCTGTTTGTACTGATGGTGCCTCCTCTATGCTAGGAGAAAATTCCGAGTTTGTTGC
CTACGTGAAAAAAGAGATACCTCATATCGTAGTTACACATTGTTTATTGAATCCTCATGCACTTGTCATA
AAGACATTGCCTACAAAACTGAGGGATGCTCTGTTTACTGTGGTGAGGGTAATAAATTTCATCAAAGGGA
GAGCTCCAAATCATCGCCTATTTCAGGCTTTCTTTGAAGAAATTGGCATAGAATATAGTGTCCTCCTTTT
CCATACTGAAATGAGGTGGCTTTCCCGAGGCCAAATACTTACTCACATTTTTGAAATGTATGAAGAAATA
AATCAGTTTCTTCACCACAAGAGCAGTAATTTAGTTGATGGCTTTGAAAATAAAGAGTTTAAAATTCACC
TAGCATACCTTGCAGATTTATTCAAACACTTAAATGAACTCAGTGCATCTATGCAGAGGACTGGGATGAA
CACAGTATCAGCTAGAGAGAAGTTATCTGCTTTTGTTAGGAAGTTTCCATTTTGGCAAAAACGAATTGAG
AAAAGAAATTTTACCAATTTTCCTTTTCTTGAAGAAATAATTGTTTCAGATAATGAAGGCATATTCATTG
CAGCTGAAATAACACTGCATCTGCAACAATTGAGCAACTTCTTCCATGGATATTTTTCCATTGGAGATCT
TAATGAGGCAAGTAAATGGATATTGGATCCATTTCTTTTTAATATCGATTTTGTTGATGATAGTTATTTA
ATGAAAAATGATCTTGCTGAATTACGAGCTAGTGGCCAAATCCTAATGGAATTTGAGACAATGAAGCTTG
AGGATTTCTGGTGTGCCCAATTCACAGCATTTCCAAACCTGGCAAAGACAGCTCTAGAAATCCTTATGCC
ATTTGCAACTACATACCTTTGTGAGTTGGGATTTTCATCACTTTTACATTTCAAAACAAAGTCCAGAAGC
TGCTTTAATCTGAGTGATGATATCCGTGTGGCTATTTCAAAAAAAGTTCCTCGTTTCTCGGACATCATTG
AACAAAAGCTACAGCTACAGCAGAAGTCACTGTAA

Translation (594 aa):
MSKKRKWDDDYVRYWFTCTTEVDGTQRPQCVLCNSVFSNADLRPSKLSDHFNRQHGGVAGHDLNSLKHMP
APSDQSETLKAFGVASHEDTLLQASYQFAYLCAKEKNPHTVAEKLVKPCALEIAQIVLGPDAQKKLQQVP
LSDDVIHSRIDEMSQDILQQVLEDIKASPLKVGIQLAETTDMDDCSQLMAFVRYIKEREIVEEFLFCEPL
QLSMKGIDVFNLFRDFFLKHKIALDVCGSVCTDGASSMLGENSEFVAYVKKEIPHIVVTHCLLNPHALVI
KTLPTKLRDALFTVVRVINFIKGRAPNHRLFQAFFEEIGIEYSVLLFHTEMRWLSRGQILTHIFEMYEEI
NQFLHHKSSNLVDGFENKEFKIHLAYLADLFKHLNELSASMQRTGMNTVSAREKLSAFVRKFPFWQKRIE
KRNFTNFPFLEEIIVSDNEGIFIAAEITLHLQQLSNFFHGYFSIGDLNEASKWILDPFLFNIDFVDDSYL
MKNDLAELRASGQILMEFETMKLEDFWCAQFTAFPNLAKTALEILMPFATTYLCELGFSSLLHFKTKSRS
CFNLSDDIRVAISKKVPRFSDIIEQKLQLQQKSL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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