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Report for CCDS87044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87044.1 Public Homo sapiens 3 SLC6A1 24 110 108 CCDS HistoryNCBI Gene:6529Re-query CCDS DB by CCDS ID:87044.1Re-query CCDS DB by GeneID:6529See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645281.1 ENSP00000493746.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645281.1Link to Ensembl Protein Viewer:ENSP00000493746.1Re-query CCDS DB by Nucleotide ID:ENST00000645281Re-query CCDS DB by Protein ID:ENSP00000493746
Original member Current member EBI ENST00000646072.1 ENSP00000494002.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646072.1Link to Ensembl Protein Viewer:ENSP00000494002.1Re-query CCDS DB by Nucleotide ID:ENST00000646072Re-query CCDS DB by Protein ID:ENSP00000494002
Original member Current member EBI ENST00000645776.1 ENSP00000495375.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645776.1Link to Ensembl Protein Viewer:ENSP00000495375.1Re-query CCDS DB by Nucleotide ID:ENST00000645776Re-query CCDS DB by Protein ID:ENSP00000495375
Original member Current member NCBI NM_001348252.2 NP_001335181.1 Accepted alive Link to Nucleotide Sequence:NM_001348252.2Link to Protein Sequence:NP_001335181.1Re-query CCDS DB by Nucleotide ID:NM_001348252Re-query CCDS DB by Protein ID:NP_001335181Link to BLAST:NP_001335181.1
Original member Current member NCBI NM_001348253.2 NP_001335182.1 Accepted alive Link to Nucleotide Sequence:NM_001348253.2Link to Protein Sequence:NP_001335182.1Re-query CCDS DB by Nucleotide ID:NM_001348253Re-query CCDS DB by Protein ID:NP_001335182Link to BLAST:NP_001335182.1

Chromosomal Locations for CCDS 87044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 11020276 11020322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11022336 11022468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11025449 11025583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11025773 11025876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11026235 11026359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11028735 11028847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11029221 11029352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11031177 11031279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11033639 11033739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11034531 11034698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11036862 11036966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGTCAACACTACCAACATGACCAGCGCTGTGGTGGAGTTCTGGGAGCGCAACATGCATCAGATGACGG
ACGGGCTGGATAAGCCAGGTCAGATCCGCTGGCCACTGGCCATCACGCTGGCCATCGCCTGGATCCTTGT
GTATTTCTGTATCTGGAAGGGTGTTGGCTGGACTGGAAAGGTGGTCTACTTTTCAGCCACATACCCCTAC
ATCATGCTGATCATCCTGTTCTTCCGTGGAGTGACGCTGCCCGGGGCCAAGGAGGGCATCCTCTTCTACA
TCACACCCAACTTCCGCAAGCTGTCTGACTCCGAGGTGTGGCTGGATGCGGCAACCCAGATCTTCTTCTC
ATACGGGCTGGGCCTGGGGTCCCTGATCGCTCTCGGGAGCTACAACTCTTTCCACAACAATGTCTACAGG
GACTCCATCATCGTCTGCTGCATCAATTCGTGCACCAGCATGTTCGCAGGATTCGTCATCTTCTCCATCG
TGGGCTTCATGGCCCATGTCACCAAGAGGTCCATTGCTGATGTGGCGGCCTCAGGCCCCGGGCTGGCGTT
CCTGGCATACCCAGAGGCGGTGACCCAGCTGCCTATCTCCCCACTCTGGGCCATCCTCTTCTTCTCCATG
CTGTTGATGCTGGGCATTGACAGCCAGTTCTGCACTGTGGAGGGCTTCATCACAGCCCTGGTGGATGAGT
ACCCCAGGCTCCTCCGCAACCGCAGAGAGCTCTTCATTGCTGCTGTCTGCATCATCTCCTACCTGATCGG
TCTCTCTAACATCACTCAGGGGGGTATTTATGTCTTCAAACTCTTTGACTACTACTCTGCCAGTGGCATG
AGCCTGCTGTTCCTCGTGTTCTTTGAATGTGTCTCTATTTCCTGGTTTTACGGTGTCAACCGATTCTATG
ACAATATCCAAGAGATGGTTGGATCCAGGCCCTGCATCTGGTGGAAACTCTGCTGGTCTTTCTTCACACC
AATCATTGTGGCGGGCGTGTTCATTTTCAGTGCTGTGCAGATGACGCCACTCACCATGGGAAACTATGTT
TTCCCCAAGTGGGGCCAGGGTGTGGGCTGGCTGATGGCTCTGTCTTCCATGGTCCTCATCCCCGGGTACA
TGGCCTACATGTTCCTCACCTTAAAGGGCTCCCTGAAGCAGCGCATCCAAGTCATGGTCCAGCCCAGCGA
AGACATCGTTCGCCCAGAGAATGGTCCTGAGCAGCCCCAGGCGGGCAGCTCCACCAGCAAGGAGGCCTAC
ATCTAG

Translation (421 aa):
MVNTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPY
IMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYR
DSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSM
LLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGM
SLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYV
FPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQRIQVMVQPSEDIVRPENGPEQPQAGSSTSKEAY
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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