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Report for CCDS7316.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7316.3 Public Homo sapiens 10 DNAJB12 24 110 108 CCDS HistoryNCBI Gene:54788Re-query CCDS DB by CCDS ID:7316.3Re-query CCDS DB by GeneID:54788See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 7316.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7316.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444643.8 ENSP00000403313.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444643.8Link to Ensembl Protein Viewer:ENSP00000403313.2Re-query CCDS DB by Nucleotide ID:ENST00000444643Re-query CCDS DB by Protein ID:ENSP00000403313
Original member Current member NCBI NM_001002762.5 NP_001002762.3 Accepted alive Link to Nucleotide Sequence:NM_001002762.5Link to Protein Sequence:NP_001002762.3Re-query CCDS DB by Nucleotide ID:NM_001002762Re-query CCDS DB by Protein ID:NP_001002762Link to BLAST:NP_001002762.3
Original member Current member NCBI NM_001365081.3 NP_001352010.1 Accepted alive Link to Nucleotide Sequence:NM_001365081.3Link to Protein Sequence:NP_001352010.1Re-query CCDS DB by Nucleotide ID:NM_001365081Re-query CCDS DB by Protein ID:NP_001352010Link to BLAST:NP_001352010.1
Original member Current member NCBI NM_017626.7 NP_060096.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017626.7Link to Protein Sequence:NP_060096.4Re-query CCDS DB by Nucleotide ID:NM_017626Re-query CCDS DB by Protein ID:NP_060096Link to BLAST:NP_060096.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002762.3 375 Q9NXW2-1 375 100% 0 0
NP_001352010.1 375 Q9NXW2-1 375 100% 0 0
NP_060096.4 375 Q9NXW2-1 375 100% 0 0

Chromosomal Locations for CCDS 7316.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 72335810 72335931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72336524 72336696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72338202 72338311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72340789 72340868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72340985 72341170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72343366 72343511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72344950 72345127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72354765 72354897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGAATCCAACAAGGATGAAGCTGAGCGCTGTATCAGCATCGCCCTCAAGGCCATCCAGAGCAACCAGC
CCGACCGGGCGCTCCGCTTCCTGGAGAAGGCACAGCGGCTGTATCCGACGCCGCGAGTTCGCGCCCTGAT
TGAGTCCCTCAACCAGAAACCACAGACTGCCGGTGACCAACCCCCACCCACAGACACAACCCATGCCACC
CACAGGAAAGCAGGTGGGACCGATGCCCCCTCGGCCAACGGTGAAGCTGGAGGAGAGAGCACCAAAGGCT
ACACTGCAGAACAGGTTGCAGCTGTGAAAAGGGTCAAGCAATGTAAAGATTACTATGAGATCCTGGGGGT
GAGCAGAGGGGCCTCGGATGAGGACCTGAAGAAGGCCTACCGCAGACTGGCCCTCAAATTCCACCCAGAC
AAGAACCACGCACCTGGTGCCACTGAAGCCTTCAAAGCCATTGGCACAGCATATGCGGTACTCAGCAACC
CGGAGAAGAGGAAGCAGTATGACCAGTTCGGCGATGACAAGAGCCAGGCGGCCCGGCACGGCCATGGGCA
TGGGGATTTCCACCGTGGCTTTGAGGCCGACATCTCCCCTGAAGACCTCTTCAACATGTTCTTTGGCGGC
GGCTTCCCTTCTAGTAACGTCCACGTCTACAGCAACGGCCGCATGCGCTATACCTACCAGCAAAGGCAGG
ACCGCAGGGACAACCAGGGTGATGGCGGGCTAGGGGTGTTTGTGCAGCTGATGCCTATCCTCATCCTGAT
TCTCGTGTCAGCTCTCAGCCAGCTCATGGTCTCCAGTCCACCCTACAGTCTGAGTCCAAGACCGTCCGTG
GGCCACATCCACAGGCGAGTCACTGACCACCTGGGTGTCGTCTACTATGTGGGAGACACTTTCTCCGAAG
AGTACACAGGCTCCAGCCTCAAAACAGTCGAGCGGAATGTGGAAGATGATTATATCGCCAACCTCCGGAA
CAACTGCTGGAAGGAGAAGCAGCAGAAGGAAGGCTTGCTGTACCGGGCACGCTACTTTGGCGACACAGAT
ATGTACCACAGAGCACAGAAGATGGGCACCCCCAGCTGCAGCCGACTGTCAGAGGTGCAGGCCTCCCTGC
ATGGATAG

Translation (375 aa):
MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVRALIESLNQKPQTAGDQPPPTDTTHAT
HRKAGGTDAPSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRRLALKFHPD
KNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHGHGDFHRGFEADISPEDLFNMFFGG
GFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPSV
GHIHRRVTDHLGVVYYVGDTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDTD
MYHRAQKMGTPSCSRLSEVQASLHG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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