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Report for CCDS75827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75827.1 Public Homo sapiens 9 APTX 24 110 108 CCDS HistoryNCBI Gene:54840Re-query CCDS DB by CCDS ID:75827.1Re-query CCDS DB by GeneID:54840See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 75827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309615.8 ENSP00000311547.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309615.8Link to Ensembl Protein Viewer:ENSP00000311547.4Re-query CCDS DB by Nucleotide ID:ENST00000309615Re-query CCDS DB by Protein ID:ENSP00000311547
Original member Current member EBI ENST00000436040.7 ENSP00000400806.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436040.7Link to Ensembl Protein Viewer:ENSP00000400806.4Re-query CCDS DB by Nucleotide ID:ENST00000436040Re-query CCDS DB by Protein ID:ENSP00000400806
Original member Current member EBI ENST00000476858.6 ENSP00000419042.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476858.6Link to Ensembl Protein Viewer:ENSP00000419042.2Re-query CCDS DB by Nucleotide ID:ENST00000476858Re-query CCDS DB by Protein ID:ENSP00000419042
Original member Current member NCBI NM_001195250.2 NP_001182179.2 Accepted alive Link to Nucleotide Sequence:NM_001195250.2Link to Protein Sequence:NP_001182179.2Re-query CCDS DB by Nucleotide ID:NM_001195250Re-query CCDS DB by Protein ID:NP_001182179Link to BLAST:NP_001182179.2
Original member Current member NCBI NM_001195254.2 NP_001182183.1 Accepted alive Link to Nucleotide Sequence:NM_001195254.2Link to Protein Sequence:NP_001182183.1Re-query CCDS DB by Nucleotide ID:NM_001195254Re-query CCDS DB by Protein ID:NP_001182183Link to BLAST:NP_001182183.1
Original member Current member NCBI NM_001369000.1 NP_001355929.1 Accepted alive Link to Nucleotide Sequence:NM_001369000.1Link to Protein Sequence:NP_001355929.1Re-query CCDS DB by Nucleotide ID:NM_001369000Re-query CCDS DB by Protein ID:NP_001355929Link to BLAST:NP_001355929.1
Original member Current member NCBI NM_001369001.1 NP_001355930.1 Accepted alive Link to Nucleotide Sequence:NM_001369001.1Link to Protein Sequence:NP_001355930.1Re-query CCDS DB by Nucleotide ID:NM_001369001Re-query CCDS DB by Protein ID:NP_001355930Link to BLAST:NP_001355930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182179.2 288 Q7Z2E3-5 288 100% 0 0
NP_001182183.1 288 Q7Z2E3-5 288 100% 0 0
NP_001355929.1 288 Q7Z2E3-5 288 100% 0 0
NP_001355930.1 288 Q7Z2E3-5 288 100% 0 0

Chromosomal Locations for CCDS 75827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32973498 32973652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32974458 32974561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32984631 32984857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32985971 32986030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32987544 32987731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32989759 32989891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGATGCGGGTGTGCTGGTTGGTGAGACAGGACAGCCGGCACCAGCGAATCAGACTTCCACATTTGGAAG
CAGTTGTGATTGGGCGTGGCCCAGAGACCAAGATCACTGATAAGAAATGTTCTCGACAGCAAGAGTTTGA
GGAAGAGGCAAAGAACCCTGGCCTGGAAACACACAGGAAGAGAAAGAGATCAGGCAACAGTGATTCTATA
GAAAGGGATGCTGCTCAGGAAGCTGAGGCTGGGACAGGGCTGGAACCTGGGAGCAACTCTGGCCAATGCT
CTGTGCCCCTAAAGAAGGGAAAAGATGCACCTATCAAAAAGGAATCCCTGGGCCACTGGAGTCAAGGCTT
GAAGATTTCTATGCAGGACCCCAAAATGCAGGTTTACAAAGATGAGCAGGTGGTGGTGATAAAGGATAAA
TACCCAAAGGCCCGTTACCATTGGCTGGTCTTACCGTGGACCTCCATTTCCAGTCTGAAGGCTGTGGCCA
GGGAACACCTTGAACTCCTTAAGCATATGCACACTGTGGGGGAAAAGGTGATTGTAGATTTTGCTGGGTC
CAGCAAACTCCGCTTCCGATTGGGCTACCACGCCATTCCGAGTATGAGCCATGTACATCTTCATGTGATC
AGCCAGGATTTTGATTCTCCTTGCCTTAAAAACAAAAAACATTGGAATTCTTTCAATACAGAATACTTCC
TAGAATCACAAGCTGTGATCGAGATGGTACAAGAGGCTGGTAGAGTAACTGTCCGAGATGGGATGCCTGA
GCTCTTGAAGCTGCCCCTTCGTTGTCATGAGTGCCAGCAGCTGCTGCCTTCCATTCCTCAGCTGAAAGAA
CATCTCAGGAAGCACTGGACACAGTGA

Translation (288 aa):
MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQEFEEEAKNPGLETHRKRKRSGNSDSI
ERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDK
YPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVI
SQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKE
HLRKHWTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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