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Report for CCDS522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
522.1 Public Homo sapiens 1 PRDX1 24 110 108 CCDS HistoryNCBI Gene:5052Re-query CCDS DB by CCDS ID:522.1Re-query CCDS DB by GeneID:5052See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 522.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262746.5 ENSP00000262746.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262746.5Link to Ensembl Protein Viewer:ENSP00000262746.1Re-query CCDS DB by Nucleotide ID:ENST00000262746Re-query CCDS DB by Protein ID:ENSP00000262746
Original member Current member EBI ENST00000319248.13 ENSP00000361152.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319248.13Link to Ensembl Protein Viewer:ENSP00000361152.5Re-query CCDS DB by Nucleotide ID:ENST00000319248Re-query CCDS DB by Protein ID:ENSP00000361152
Original member Current member EBI ENST00000424390.2 ENSP00000389047.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424390.2Link to Ensembl Protein Viewer:ENSP00000389047.2Re-query CCDS DB by Nucleotide ID:ENST00000424390Re-query CCDS DB by Protein ID:ENSP00000389047
Original member Current member EBI ENST00000447184.6 ENSP00000407034.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447184.6Link to Ensembl Protein Viewer:ENSP00000407034.2Re-query CCDS DB by Nucleotide ID:ENST00000447184Re-query CCDS DB by Protein ID:ENSP00000407034
Original member Current member EBI ENST00000676549.1 ENSP00000503140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676549.1Link to Ensembl Protein Viewer:ENSP00000503140.1Re-query CCDS DB by Nucleotide ID:ENST00000676549Re-query CCDS DB by Protein ID:ENSP00000503140
Original member Current member NCBI NM_001202431.2 NP_001189360.1 Accepted alive Link to Nucleotide Sequence:NM_001202431.2Link to Protein Sequence:NP_001189360.1Re-query CCDS DB by Nucleotide ID:NM_001202431Re-query CCDS DB by Protein ID:NP_001189360Link to BLAST:NP_001189360.1
Original member Current member NCBI NM_002574.4 NP_002565.1 Accepted alive Link to Nucleotide Sequence:NM_002574.4Link to Protein Sequence:NP_002565.1Re-query CCDS DB by Nucleotide ID:NM_002574Re-query CCDS DB by Protein ID:NP_002565Link to BLAST:NP_002565.1
Original member Current member NCBI NM_181696.3 NP_859047.1 Accepted alive Link to Nucleotide Sequence:NM_181696.3Link to Protein Sequence:NP_859047.1Re-query CCDS DB by Nucleotide ID:NM_181696Re-query CCDS DB by Protein ID:NP_859047Link to BLAST:NP_859047.1
Original member Current member NCBI NM_181697.3 NP_859048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181697.3Link to Protein Sequence:NP_859048.1Re-query CCDS DB by Nucleotide ID:NM_181697Re-query CCDS DB by Protein ID:NP_859048Link to BLAST:NP_859048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001189360.1 199 Q06830 199 100% 0 0
NP_002565.1 199 Q06830 199 100% 0 0
NP_859047.1 199 Q06830 199 100% 0 0
NP_859048.1 199 Q06830 199 100% 0 0

Chromosomal Locations for CCDS 522.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45511329 45511414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45514507 45514637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45514873 45514995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45515654 45515807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45518938 45519043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTCTTCAGGAAATGCTAAAATTGGGCACCCTGCCCCCAACTTCAAAGCCACAGCTGTTATGCCAGATG
GTCAGTTTAAAGATATCAGCCTGTCTGACTACAAAGGAAAATATGTTGTGTTCTTCTTTTACCCTCTTGA
CTTCACCTTTGTGTGCCCCACGGAGATCATTGCTTTCAGTGATAGGGCAGAAGAATTTAAGAAACTCAAC
TGCCAAGTGATTGGTGCTTCTGTGGATTCTCACTTCTGTCATCTAGCATGGGTCAATACACCTAAGAAAC
AAGGAGGACTGGGACCCATGAACATTCCTTTGGTATCAGACCCGAAGCGCACCATTGCTCAGGATTATGG
GGTCTTAAAGGCTGATGAAGGCATCTCGTTCAGGGGCCTTTTTATCATTGATGATAAGGGTATTCTTCGG
CAGATCACTGTAAATGACCTCCCTGTTGGCCGCTCTGTGGATGAGACTTTGAGACTAGTTCAGGCCTTCC
AGTTCACTGACAAACATGGGGAAGTGTGCCCAGCTGGCTGGAAACCTGGCAGTGATACCATCAAGCCTGA
TGTCCAAAAGAGCAAAGAATATTTCTCCAAGCAGAAGTGA

Translation (199 aa):
MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN
CQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR
QITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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