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Report for CCDS4054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4054.1 Public Homo sapiens 5 ZCCHC9 24 110 108 CCDS HistoryNCBI Gene:84240Re-query CCDS DB by CCDS ID:4054.1Re-query CCDS DB by GeneID:84240See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4054.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254037.6 ENSP00000254037.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000254037.6Link to Ensembl Protein Viewer:ENSP00000254037.2Re-query CCDS DB by Nucleotide ID:ENST00000254037Re-query CCDS DB by Protein ID:ENSP00000254037
Original member Current member EBI ENST00000380199.9 ENSP00000369546.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380199.9Link to Ensembl Protein Viewer:ENSP00000369546.5Re-query CCDS DB by Nucleotide ID:ENST00000380199Re-query CCDS DB by Protein ID:ENSP00000369546
Original member Current member EBI ENST00000407610.8 ENSP00000385047.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407610.8Link to Ensembl Protein Viewer:ENSP00000385047.3Re-query CCDS DB by Nucleotide ID:ENST00000407610Re-query CCDS DB by Protein ID:ENSP00000385047
Original member Current member EBI ENST00000438268.2 ENSP00000412637.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438268.2Link to Ensembl Protein Viewer:ENSP00000412637.2Re-query CCDS DB by Nucleotide ID:ENST00000438268Re-query CCDS DB by Protein ID:ENSP00000412637
Original member Current member NCBI NM_001131035.2 NP_001124507.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001131035.2Link to Protein Sequence:NP_001124507.1Re-query CCDS DB by Nucleotide ID:NM_001131035Re-query CCDS DB by Protein ID:NP_001124507Link to BLAST:NP_001124507.1
Original member Current member NCBI NM_001131036.2 NP_001124508.1 Accepted alive Link to Nucleotide Sequence:NM_001131036.2Link to Protein Sequence:NP_001124508.1Re-query CCDS DB by Nucleotide ID:NM_001131036Re-query CCDS DB by Protein ID:NP_001124508Link to BLAST:NP_001124508.1
Original member Current member NCBI NM_032280.3 NP_115656.1 Accepted alive Link to Nucleotide Sequence:NM_032280.3Link to Protein Sequence:NP_115656.1Re-query CCDS DB by Nucleotide ID:NM_032280Re-query CCDS DB by Protein ID:NP_115656Link to BLAST:NP_115656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124507.1 271 Q8N567 271 100% 0 0
NP_001124508.1 271 Q8N567 271 100% 0 0
NP_115656.1 271 Q8N567 271 100% 0 0

Chromosomal Locations for CCDS 4054.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 81304758 81305141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81308561 81308711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81308946 81309038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81311211 81311279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 81312544 81312662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGACCAGGTGGGCCCGAGTTAGTACCACATATAACAAGAGACCCTTGCCTGCAACATCATGGGAGGACA
TGAAGAAGGGATCCTTTGAGGGAACAAGCCAAAACCTACCAAAGCGTAAACAACTTGAAGCCAATAGGCT
ATCCCTCAAAAATGATGCACCCCAAGCAAAACATAAAAAGAACAAAAAGAAAAAAGAGTACTTAAATGAA
GATGTGAATGGATTCATGGAATACCTAAGACAGAATTCACAGATGGTTCACAATGGGCAAATTATAGCAA
CAGACAGTGAGGAAGTAAGGGAAGAAATTGCAGTTGCTTTAAAGAAAGACAGTCGACGGGAAGGAAGAAG
ATTAAAAAGACAAGCGGCAAAGAAAAATGCAATGGTGTGTTTCCATTGTAGAAAACCTGGTCATGGAATT
GCAGATTGCCCCGCCGCCCTTGAAAATCAAGACATGGGCACTGGGATATGTTACAGGTGTGGGTCCACAG
AGCACGAAATAACCAAGTGTAAGGCTAAAGTAGACCCGGCTCTTGGCGAATTTCCTTTTGCAAAATGTTT
TGTTTGTGGAGAAATGGGGCACCTGTCTAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCTGATGGT
GGCGGTTGCAAACTTTGTGGCTCTGTGGAACATTTAAAGAAAGATTGCCCTGAAAGTCAGAATTCAGAGC
GAATGGTCACAGTTGGTCGCTGGGCAAAGGGAATGAGTGCAGACTATGAAGAAATTTTGGATGTACCTAA
ACCGCAAAAACCCAAAACAAAAATACCTAAAGTTGTTAATTTTTGA

Translation (271 aa):
MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKKNKKKKEYLNE
DVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQAAKKNAMVCFHCRKPGHGI
ADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADG
GGCKLCGSVEHLKKDCPESQNSERMVTVGRWAKGMSADYEEILDVPKPQKPKTKIPKVVNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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