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Report for CCDS13415.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
13415.1 |
Public |
Homo sapiens |
20 |
STAU1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:6780](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:13415.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:6780](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 20 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 13415.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000347458.9 |
ENSP00000323443.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000347458.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000323443.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000347458](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000323443](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000340954.11 |
ENSP00000345425.6 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000340954.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000345425.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000340954](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000345425](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000360426.8 |
ENSP00000353604.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000360426.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000353604.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000360426](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000353604](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_004602.4 |
NP_004593.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_004602.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_004593.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_004602](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_004593](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_004593.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_017452.4 |
NP_059346.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_017452.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_059346.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_017452](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_059346](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_059346.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_017454.4 |
NP_059348.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_017454.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_059348.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_017454](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_059348](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_059348.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 13415.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1491 nt): ATGAAACTTGGAAAAAAACCAATGTATAAGCCTGTTGACCCTTACTCTCGGATGCAGTCCACCTATAACT ACAACATGAGAGGAGGTGCTTATCCCCCGAGGTACTTTTACCCATTTCCAGTTCCACCTTTACTTTATCA AGTGGAACTTTCTGTGGGAGGACAGCAATTTAATGGCAAAGGAAAGACAAGACAGGCTGCGAAACACGAT GCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAGGTGAATGGAAGAG AATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATTGCACTTAAACGGAACTT GCCTGTGAATTTCGAGGTGGCCCGGGAGAGTGGCCCACCCCACATGAAGAACTTTGTGACCAAGGTTTCG GTTGGGGAGTTTGTGGGGGAAGGTGAAGGGAAAAGCAAGAAGATTTCAAAGAAAAATGCCGCCATAGCTG TTCTTGAGGAGCTGAAGAAGTTACCGCCCCTGCCTGCAGTTGAACGAGTAAAGCCTAGAATCAAAAAGAA AACAAAACCCATAGTCAAGCCACAGACAAGCCCAGAATATGGCCAGGGGATCAATCCGATTAGCCGACTG GCCCAGATCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACACGCTCCTCACAGAGCGAGGCCTCCCGC GCCGCAGGGAGTTTGTGATGCAGGTGAAGGTTGGAAACCACACTGCAGAAGGAACGGGCACCAACAAGAA GGTGGCCAAGCGCAATGCAGCCGAGAACATGCTGGAGATCCTTGGTTTCAAAGTCCCGCAGGCGCAGCCC ACCAAACCCGCACTCAAGTCAGAGGAGAAGACACCCATAAAGAAACCAGGGGATGGAAGAAAAGTAACCT TTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAGTAATAAAGAGGATGAGTTCAGGATGCCTTATCT AAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATGGTGCCCGAGGTCGCCCAGGCTGTAGGAGTTAGT CAAGGACATCACACCAAAGATTTTACCAGGGCAGCTCCGAATCCTGCCAAGGCCACGGTAACTGCCATGA TAGCCCGAGAGTTGTTGTATGGGGGCACCTCGCCCACAGCCGAGACCATTTTAAAGAATAACATCTCTTC AGGCCACGTACCCCATGGACCTCTCACGAGACCCTCTGAGCAACTGGACTATCTTTCCAGAGTCCAGGGA TTCCAGGTTGAATACAAAGACTTCCCCAAAAACAACAAGAACGAATTTGTATCTCTTATCAATTGCTCCT CTCAGCCACCTCTGATCAGCCATGGTATCGGCAAGGATGTGGAGTCCTGCCATGATATGGCTGCGCTGAA CATCTTAAAGTTGCTGTCTGAGTTGGACCAACAAAGTACAGAGATGCCAAGAACAGGAAACGGACCAATG TCTGTGTGTGGGAGGTGCTGA
Translation (496 aa): MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKTRQAAKHD AAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVS VGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRL AQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQP TKPALKSEEKTPIKKPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVS QGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDYLSRVQG FQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPM SVCGRC
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