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Report for CCDS10086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10086.1 Public Homo sapiens 15 CAPN3 24 110 108 CCDS HistoryNCBI Gene:825Re-query CCDS DB by CCDS ID:10086.1Re-query CCDS DB by GeneID:825See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337571.9 ENSP00000336840.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337571.9Link to Ensembl Protein Viewer:ENSP00000336840.4Re-query CCDS DB by Nucleotide ID:ENST00000337571Re-query CCDS DB by Protein ID:ENSP00000336840
Original member Current member EBI ENST00000356316.7 ENSP00000348667.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356316.7Link to Ensembl Protein Viewer:ENSP00000348667.4Re-query CCDS DB by Nucleotide ID:ENST00000356316Re-query CCDS DB by Protein ID:ENSP00000348667
Original member Current member EBI ENST00000397204.9 ENSP00000380387.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397204.9Link to Ensembl Protein Viewer:ENSP00000380387.4Re-query CCDS DB by Nucleotide ID:ENST00000397204Re-query CCDS DB by Protein ID:ENSP00000380387
Original member Current member EBI ENST00000569136.6 ENSP00000455254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569136.6Link to Ensembl Protein Viewer:ENSP00000455254.1Re-query CCDS DB by Nucleotide ID:ENST00000569136Re-query CCDS DB by Protein ID:ENSP00000455254
Original member Current member EBI ENST00000673771.1 ENSP00000501023.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673771.1Link to Ensembl Protein Viewer:ENSP00000501023.1Re-query CCDS DB by Nucleotide ID:ENST00000673771Re-query CCDS DB by Protein ID:ENSP00000501023
Original member Current member EBI ENST00000674139.1 ENSP00000501054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674139.1Link to Ensembl Protein Viewer:ENSP00000501054.1Re-query CCDS DB by Nucleotide ID:ENST00000674139Re-query CCDS DB by Protein ID:ENSP00000501054
Original member Current member EBI ENST00000673928.1 ENSP00000501099.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673928.1Link to Ensembl Protein Viewer:ENSP00000501099.1Re-query CCDS DB by Nucleotide ID:ENST00000673928Re-query CCDS DB by Protein ID:ENSP00000501099
Original member Current member EBI ENST00000674149.1 ENSP00000501112.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674149.1Link to Ensembl Protein Viewer:ENSP00000501112.1Re-query CCDS DB by Nucleotide ID:ENST00000674149Re-query CCDS DB by Protein ID:ENSP00000501112
Original member Current member EBI ENST00000673692.1 ENSP00000501138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673692.1Link to Ensembl Protein Viewer:ENSP00000501138.1Re-query CCDS DB by Nucleotide ID:ENST00000673692Re-query CCDS DB by Protein ID:ENSP00000501138
Original member Current member EBI ENST00000673851.1 ENSP00000501142.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673851.1Link to Ensembl Protein Viewer:ENSP00000501142.1Re-query CCDS DB by Nucleotide ID:ENST00000673851Re-query CCDS DB by Protein ID:ENSP00000501142
Original member Current member EBI ENST00000673886.1 ENSP00000501155.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673886.1Link to Ensembl Protein Viewer:ENSP00000501155.1Re-query CCDS DB by Nucleotide ID:ENST00000673886Re-query CCDS DB by Protein ID:ENSP00000501155
Original member Current member EBI ENST00000674146.1 ENSP00000501175.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674146.1Link to Ensembl Protein Viewer:ENSP00000501175.1Re-query CCDS DB by Nucleotide ID:ENST00000674146Re-query CCDS DB by Protein ID:ENSP00000501175
Original member Current member EBI ENST00000673936.1 ENSP00000501189.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673936.1Link to Ensembl Protein Viewer:ENSP00000501189.1Re-query CCDS DB by Nucleotide ID:ENST00000673936Re-query CCDS DB by Protein ID:ENSP00000501189
Original member Current member EBI ENST00000674119.1 ENSP00000501217.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674119.1Link to Ensembl Protein Viewer:ENSP00000501217.1Re-query CCDS DB by Nucleotide ID:ENST00000674119Re-query CCDS DB by Protein ID:ENSP00000501217
Original member Current member EBI ENST00000674018.1 ENSP00000501271.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674018.1Link to Ensembl Protein Viewer:ENSP00000501271.1Re-query CCDS DB by Nucleotide ID:ENST00000674018Re-query CCDS DB by Protein ID:ENSP00000501271
Original member Current member EBI ENST00000673890.1 ENSP00000501293.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673890.1Link to Ensembl Protein Viewer:ENSP00000501293.1Re-query CCDS DB by Nucleotide ID:ENST00000673890Re-query CCDS DB by Protein ID:ENSP00000501293
Original member Current member EBI ENST00000674093.1 ENSP00000501303.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674093.1Link to Ensembl Protein Viewer:ENSP00000501303.1Re-query CCDS DB by Nucleotide ID:ENST00000674093Re-query CCDS DB by Protein ID:ENSP00000501303
Original member Current member NCBI NM_173089.2 NP_775112.1 Accepted alive Link to Nucleotide Sequence:NM_173089.2Link to Protein Sequence:NP_775112.1Re-query CCDS DB by Nucleotide ID:NM_173089Re-query CCDS DB by Protein ID:NP_775112Link to BLAST:NP_775112.1
Original member Current member NCBI NM_173090.2 NP_775113.1 Accepted alive Link to Nucleotide Sequence:NM_173090.2Link to Protein Sequence:NP_775113.1Re-query CCDS DB by Nucleotide ID:NM_173090Re-query CCDS DB by Protein ID:NP_775113Link to BLAST:NP_775113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775112.1 156 P20807-5 156 100% 0 0
NP_775113.1 156 P20807-5 156 100% 0 0

Chromosomal Locations for CCDS 10086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 42409790 42409844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42409931 42409995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42410428 42410496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42410588 42410666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42410884 42411000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42411287 42411345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42411747 42411773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAACACAGTCGTGAACAAACACAAGGACCTGAAGA
CACACGGGTTCACACTGGAGTCCTGCCGTAGCATGATTGCGCTCATGGATACAGATGGCTCTGGAAAGCT
CAACCTGCAGGAGTTCCACCACCTCTGGAACAAGATTAAGGCCTGGCAGAAAATTTTCAAACACTATGAC
ACAGACCAGTCCGGCACCATCAACAGCTACGAGATGCGAAATGCAGTCAACGACGCAGGATTCCACCTCA
ACAACCAGCTCTATGACATCATTACCATGCGGTACGCAGACAAACACATGAACATCGACTTTGACAGTTT
CATCTGCTGCTTCGTTAGGCTGGAGGGCATGTTCAGAGCTTTTCATGCATTTGACAAGGATGGAGATGGT
ATCATCAAGCTCAACGTTCTGGAGTGGCTGCAGCTCACCATGTATGCCTGA

Translation (156 aa):
MEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYD
TDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDG
IIKLNVLEWLQLTMYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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