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Report for CCDS4463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4463.1 Public Homo sapiens 5 TRIM7 24 110 108 CCDS HistoryNCBI Gene:81786Re-query CCDS DB by CCDS ID:4463.1Re-query CCDS DB by GeneID:81786See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4463.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393315.5 ENSP00000376991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393315.5Link to Ensembl Protein Viewer:ENSP00000376991.1Re-query CCDS DB by Nucleotide ID:ENST00000393315Re-query CCDS DB by Protein ID:ENSP00000376991
Original member Current member EBI ENST00000422067.2 ENSP00000391458.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422067.2Link to Ensembl Protein Viewer:ENSP00000391458.2Re-query CCDS DB by Nucleotide ID:ENST00000422067Re-query CCDS DB by Protein ID:ENSP00000391458
Original member Current member NCBI NM_203294.2 NP_976039.1 Accepted alive Link to Nucleotide Sequence:NM_203294.2Link to Protein Sequence:NP_976039.1Re-query CCDS DB by Nucleotide ID:NM_203294Re-query CCDS DB by Protein ID:NP_976039Link to BLAST:NP_976039.1
Original member Current member NCBI NM_203295.2 NP_976040.1 Accepted alive Link to Nucleotide Sequence:NM_203295.2Link to Protein Sequence:NP_976040.1Re-query CCDS DB by Nucleotide ID:NM_203295Re-query CCDS DB by Protein ID:NP_976040Link to BLAST:NP_976040.1
Original member Current member NCBI NM_203296.2 NP_976041.1 Accepted alive Link to Nucleotide Sequence:NM_203296.2Link to Protein Sequence:NP_976041.1Re-query CCDS DB by Nucleotide ID:NM_203296Re-query CCDS DB by Protein ID:NP_976041Link to BLAST:NP_976041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_976039.1 303 Q9C029-3 303 100% 0 0
NP_976040.1 303 Q9C029-3 303 100% 0 0
NP_976041.1 303 Q9C029-3 303 100% 0 0

Chromosomal Locations for CCDS 4463.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181195166 181195677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181198183 181198218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181198690 181198805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181199095 181199117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181199851 181200075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCAGCGGAGCAGGAGAAGGTGGGGGCAGAGTTCCAGGCACTGAGGGCTTTCCTGGTGGAGCAGGAGG
GTCGGCTGCTAGGCCGCCTGGAGGAACTGTCCCGGGAGGTGGCACAGAAGCAGAATGAGAACCTGGCCCA
GCTCGGGGTTGAGATCACCCAGCTGTCCAAGCTCAGCAGCCAGATCCAGGAGACAGCTCAAAAGCCTGAC
CTTGACTTTCTCCAGGAATTCAAAAGCACGCTGAGCAGGTGTAGCAATGTGCCTGGCCCCAAGCCAACCA
CAGTCTCTTCTGAGATGAAGAATAAAGTCTGGAATGTTTCTCTCAAGACCTTTGTCTTAAAAGGGATGCT
GAAGAAGTTCAAAGAGGACCTTCGGGGAGAGCTGGAGAAAGAGGAGAAAGTGGAGCTCACCTTGGATCCC
GACACGGCCAACCCGCGCCTCATCCTCTCTCTGGATCTTAAGGGCGTGCGCCTCGGCGAGCGGGCCCAGG
ACCTGCCCAACCACCCCTGCCGCTTCGACACCAACACCCGCGTCCTGGCGTCCTGCGGCTTCTCCTCGGG
CCGGCATCACTGGGAGGTGGAGGTGGGCTCTAAGGACGGCTGGGCCTTTGGCGTGGCCCGCGAGAGCGTG
CGCCGAAAGGGCCTGACGCCCTTCACTCCCGAGGAGGGCGTCTGGGCCCTGCAGCTCAACGGCGGCCAGT
ACTGGGCCGTGACCAGCCCCGAGCGGTCGCCCCTCAGCTGCGGGCACCTGTCGCGCGTGCGGGTGGCCCT
GGACCTGGAGGTGGGAGCCGTGTCCTTCTACGCTGTGGAGGACATGCGCCACCTCTACACCTTCCGCGTC
AACTTCCAGGAGCGCGTGTTCCCGCTTTTCTCTGTTTGCTCCACGGGCACCTACTTGCGAATCTGGCCTT
GA

Translation (303 aa):
MAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELSREVAQKQNENLAQLGVEITQLSKLSSQIQETAQKPD
LDFLQEFKSTLSRCSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGMLKKFKEDLRGELEKEEKVELTLDP
DTANPRLILSLDLKGVRLGERAQDLPNHPCRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESV
RRKGLTPFTPEEGVWALQLNGGQYWAVTSPERSPLSCGHLSRVRVALDLEVGAVSFYAVEDMRHLYTFRV
NFQERVFPLFSVCSTGTYLRIWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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