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Report for CCDS3701.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3701.2 Public Homo sapiens 4 LARP7 24 110 108 CCDS HistoryNCBI Gene:51574Re-query CCDS DB by CCDS ID:3701.2Re-query CCDS DB by GeneID:51574See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3701.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344442.10 ENSP00000344950.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344442.10Link to Ensembl Protein Viewer:ENSP00000344950.5Re-query CCDS DB by Nucleotide ID:ENST00000344442Re-query CCDS DB by Protein ID:ENSP00000344950
Original member Current member EBI ENST00000505034.6 ENSP00000421541.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505034.6Link to Ensembl Protein Viewer:ENSP00000421541.2Re-query CCDS DB by Nucleotide ID:ENST00000505034Re-query CCDS DB by Protein ID:ENSP00000421541
Original member Current member EBI ENST00000509061.5 ENSP00000422626.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509061.5Link to Ensembl Protein Viewer:ENSP00000422626.2Re-query CCDS DB by Nucleotide ID:ENST00000509061Re-query CCDS DB by Protein ID:ENSP00000422626
Original member Current member EBI ENST00000651579.1 ENSP00000499190.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651579.1Link to Ensembl Protein Viewer:ENSP00000499190.1Re-query CCDS DB by Nucleotide ID:ENST00000651579Re-query CCDS DB by Protein ID:ENSP00000499190
Original member Current member EBI ENST00000694894.1 ENSP00000511572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000694894.1Link to Ensembl Protein Viewer:ENSP00000511572.1Re-query CCDS DB by Nucleotide ID:ENST00000694894Re-query CCDS DB by Protein ID:ENSP00000511572
Original member Current member NCBI NM_001267039.4 NP_001253968.2 Accepted alive Link to Nucleotide Sequence:NM_001267039.4Link to Protein Sequence:NP_001253968.2Re-query CCDS DB by Nucleotide ID:NM_001267039Re-query CCDS DB by Protein ID:NP_001253968Link to BLAST:NP_001253968.2
Original member Current member NCBI NM_001370978.1 NP_001357907.1 Accepted alive Link to Nucleotide Sequence:NM_001370978.1Link to Protein Sequence:NP_001357907.1Re-query CCDS DB by Nucleotide ID:NM_001370978Re-query CCDS DB by Protein ID:NP_001357907Link to BLAST:NP_001357907.1
Original member Current member NCBI NM_015454.3 NP_056269.1 Accepted alive Link to Nucleotide Sequence:NM_015454.3Link to Protein Sequence:NP_056269.1Re-query CCDS DB by Nucleotide ID:NM_015454Re-query CCDS DB by Protein ID:NP_056269Link to BLAST:NP_056269.1
Original member Current member NCBI NM_016648.4 NP_057732.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016648.4Link to Protein Sequence:NP_057732.2Re-query CCDS DB by Nucleotide ID:NM_016648Re-query CCDS DB by Protein ID:NP_057732Link to BLAST:NP_057732.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001253968.2 582 Q4G0J3-1 582 100% 0 0
NP_001357907.1 582 Q4G0J3-1 582 100% 0 0
NP_056269.1 582 Q4G0J3-1 582 100% 0 0
NP_057732.2 582 Q4G0J3-1 582 100% 0 0

Chromosomal Locations for CCDS 3701.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112644670 112644871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646351 112646451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646588 112646671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646791 112646955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647034 112647127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647199 112647549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647690 112647834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112649535 112649686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112650461 112650582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112653077 112653236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112654068 112654159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112657247 112657327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGAAACTGAAAGTGGAAATCAGGAAAAGGTAATGGAAGAAGAAAGCACTGAAAAGAAAAAAGAAGTTG
AAAAAAAGAAACGGTCACGAGTTAAACAGGTGCTTGCAGATATTGCTAAGCAAGTGGACTTCTGGTTTGG
GGATGCAAATCTTCACAAGGATAGATTTCTTCGAGAACAGATAGAAAAATCTAGAGATGGATATGTTGAT
ATATCACTACTTGTGTCTTTTAACAAAATGAAAAAATTGACTACTGATGGGAAGTTAATTGCCAGAGCAT
TGAGAAGTTCAGCTGTTGTAGAGCTTGATTTGGAAGGCACCAGAATCCGGAGGAAAAAACCTCTGGGGGA
AAGACCAAAGGATGAGGATGAACGCACAGTGTATGTGGAGTTACTTCCCAAAAATGTTAATCACAGCTGG
ATTGAAAGAGTATTTGGGAAATGTGGCAATGTTGTTTATATAAGTATACCACATTATAAGTCTACTGGAG
ATCCAAAGGGATTTGCGTTTGTGGAATTTGAAACAAAAGAACAAGCAGCAAAAGCAATTGAGTTTCTTAA
CAACCCACCAGAAGAAGCACCAAGAAAACCTGGCATATTTCCTAAAACAGTGAAAAATAAGCCCATTCCA
GCCTTAAGAGTTGTGGAAGAGAAGAAAAAGAAAAAGAAGAAGAAAGGCCGAATGAAAAAGGAAGACAATA
TCCAAGCCAAAGAAGAAAACATGGACACAAGCAACACCAGCATCAGTAAAATGAAAAGATCCAGACCCAC
ATCTGAGGGCTCTGACATTGAGTCCACTGAACCCCAAAAGCAGTGCTCAAAGAAAAAGAAAAAACGGGAC
AGAGTTGAAGCATCTAGCTTACCTGAAGTCAGAACAGGGAAGAGGAAGAGAAGCAGCTCTGAAGATGCAG
AATCCCTAGCTCCCCGATCAAAAGTAAAGAAAATTATTCAGAAAGACATCATTAAGGAAGCATCAGAAGC
TTCCAAGGAAAATAGAGATATAGAAATCTCTACTGAAGAGGAAAAGGATACTGGAGATCTAAAAGATAGC
TCTCTCTTGAAAACAAAAAGGAAACATAAGAAAAAACATAAAGAGAGACATAAAATGGGAGAAGAAGTTA
TACCATTAAGAGTGCTATCAAAGAGCGAATGGATGGATTTGAAAAAAGAGTATTTAGCGCTACAAAAAGC
TAGCATGGCTTCTTTAAAAAAAACAATATCCCAAATAAAATCAGAGTCAGAAATGGAAACAGACAGTGGA
GTACCTCAAAACACTGGAATGAAAAATGAAAAAACAGCCAACAGGGAAGAGTGTCGCACCCAGGAGAAAG
TTAATGCAACAGGACCACAGTTCGTGAGTGGAGTGATTGTGAAGATCATTAGCACAGAGCCTCTACCTGG
CAGGAAACAAGTCCGGGATACTTTGGCAGCAATCTCAGAAGTTCTTTATGTTGATTTGCTAGAAGGGGAT
ACAGAATGCCATGCTAGATTTAAAACTCCTGAGGATGCTCAAGCAGTAATAAATGCCTATACAGAAATTA
ACAAGAAACACTGCTGGAAACTCGAGATCCTTTCTGGTGATCACGAACAAAGGTATTGGCAGAAGATTTT
GGTTGATAGACAGGCAAAACTTAATCAGCCTCGGGAAAAGAAAAGAGGCACTGAAAAGTTAATCACCAAA
GCTGAAAAGATTAGACTGGCAAAGACTCAACAAGCGAGTAAACATATAAGATTTTCTGAATATGATTGA

Translation (582 aa):
METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVD
ISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSW
IERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIP
ALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRD
RVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLKDS
SLLKTKRKHKKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQKASMASLKKTISQIKSESEMETDSG
VPQNTGMKNEKTANREECRTQEKVNATGPQFVSGVIVKIISTEPLPGRKQVRDTLAAISEVLYVDLLEGD
TECHARFKTPEDAQAVINAYTEINKKHCWKLEILSGDHEQRYWQKILVDRQAKLNQPREKKRGTEKLITK
AEKIRLAKTQQASKHIRFSEYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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