NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9322.1 Public Homo sapiens 13 MTIF3 24 110 108 CCDS HistoryNCBI Gene:219402Re-query CCDS DB by CCDS ID:9322.1Re-query CCDS DB by GeneID:219402See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9322.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381116.5 ENSP00000370508.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381116.5Link to Ensembl Protein Viewer:ENSP00000370508.1Re-query CCDS DB by Nucleotide ID:ENST00000381116Re-query CCDS DB by Protein ID:ENSP00000370508
Original member Current member EBI ENST00000381120.8 ENSP00000370512.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381120.8Link to Ensembl Protein Viewer:ENSP00000370512.3Re-query CCDS DB by Nucleotide ID:ENST00000381120Re-query CCDS DB by Protein ID:ENSP00000370512
Original member Current member EBI ENST00000405591.3 ENSP00000384659.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405591.3Link to Ensembl Protein Viewer:ENSP00000384659.2Re-query CCDS DB by Nucleotide ID:ENST00000405591Re-query CCDS DB by Protein ID:ENSP00000384659
Original member Current member NCBI NM_001166261.2 NP_001159733.1 Accepted alive Link to Nucleotide Sequence:NM_001166261.2Link to Protein Sequence:NP_001159733.1Re-query CCDS DB by Nucleotide ID:NM_001166261Re-query CCDS DB by Protein ID:NP_001159733Link to BLAST:NP_001159733.1
Original member Current member NCBI NM_001166262.2 NP_001159734.1 Accepted alive Link to Nucleotide Sequence:NM_001166262.2Link to Protein Sequence:NP_001159734.1Re-query CCDS DB by Nucleotide ID:NM_001166262Re-query CCDS DB by Protein ID:NP_001159734Link to BLAST:NP_001159734.1
Original member Current member NCBI NM_001166263.2 NP_001159735.1 Accepted alive Link to Nucleotide Sequence:NM_001166263.2Link to Protein Sequence:NP_001159735.1Re-query CCDS DB by Nucleotide ID:NM_001166263Re-query CCDS DB by Protein ID:NP_001159735Link to BLAST:NP_001159735.1
Original member Current member NCBI NM_152912.5 NP_690876.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152912.5Link to Protein Sequence:NP_690876.3Re-query CCDS DB by Nucleotide ID:NM_152912Re-query CCDS DB by Protein ID:NP_690876Link to BLAST:NP_690876.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159733.1 278 Q9H2K0 278 100% 0 0
NP_001159734.1 278 Q9H2K0 278 100% 0 0
NP_001159735.1 278 Q9H2K0 278 100% 0 0
NP_690876.3 278 Q9H2K0 278 100% 0 0

Chromosomal Locations for CCDS 9322.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27435675 27435893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27437116 27437273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27439989 27440448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGCTGCTCTTTTTCTAAAGAGGTTAACACTACAAACTGTAAAGTCTGAAAATAGTTGCATTAGATGTT
TTGGTAAACACATCCTGCAAAAGACAGCACCAGCACAGTTGTCCCCTATTGCTTCTGCCCCAAGACTCTC
CTTCCTAATTCATGCAAAAGCCTTTAGTACCGCTGAAGACACCCAGAATGAAGGAAAAAAGACAAAAAAG
AATAAAACAGCTTTTAGTAACGTTGGAAGAAAAATTAGTCAGCGAGTTATTCACTTATTTGATGAGAAGG
GCAATGATTTGGGAAACATGCACCGAGCAAATGTGATTAGACTTATGGATGAGCGAGACCTGCGACTGGT
TCAAAGGAACACCAGCACAGAACCTGCAGAGTATCAGCTCATGACAGGATTGCAGATCCTCCAGGAGCGG
CAGAGGCTGAGGGAGATGGAGAAGGCGAACCCCAAAACTGGACCAACCCTGAGAAAGGAACTGATTTTGT
CTTCAAATATTGGACAACATGATTTGGACACAAAGACTAAACAGATTCAGCAGTGGATTAAGAAAAAACA
CCTAGTCCAGATTACCATAAAGAAAGGAAAAAATGTAGACGTGTCAGAAAATGAAATGGAGGAGATATTT
CATCAAATACTCCAGACTATGCCTGGAATAGCTACATTCTCATCTAGGCCACAAGCTGTTCAAGGAGGAA
AAGCTTTAATGTGTGTTCTTCGTGCTTTCAGCAAAAATGAGGAGAAGGCATATAAAGAAACTCAAGAGAC
CCAGGAAAGAGACACTTTGAACAAAGACCATGGAAATGATAAGGAATCAAATGTTCTGCATCAGTAA

Translation (278 aa):
MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAEDTQNEGKKTKK
NKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTEPAEYQLMTGLQILQER
QRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIF
HQILQTMPGIATFSSRPQAVQGGKALMCVLRAFSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH