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Report for CCDS13621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13621.1 Public Homo sapiens 21 IFNAR2 24 110 108 CCDS HistoryNCBI Gene:3455Re-query CCDS DB by CCDS ID:13621.1Re-query CCDS DB by GeneID:3455See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13621.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342136.9 ENSP00000343957.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342136.9Link to Ensembl Protein Viewer:ENSP00000343957.5Re-query CCDS DB by Nucleotide ID:ENST00000342136Re-query CCDS DB by Protein ID:ENSP00000343957
Original member Current member EBI ENST00000646150.1 ENSP00000496248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646150.1Link to Ensembl Protein Viewer:ENSP00000496248.1Re-query CCDS DB by Nucleotide ID:ENST00000646150Re-query CCDS DB by Protein ID:ENSP00000496248
Original member Current member EBI ENST00000683941.1 ENSP00000508013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683941.1Link to Ensembl Protein Viewer:ENSP00000508013.1Re-query CCDS DB by Nucleotide ID:ENST00000683941Re-query CCDS DB by Protein ID:ENSP00000508013
Original member Current member EBI ENST00000683116.1 ENSP00000508125.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683116.1Link to Ensembl Protein Viewer:ENSP00000508125.1Re-query CCDS DB by Nucleotide ID:ENST00000683116Re-query CCDS DB by Protein ID:ENSP00000508125
Original member Current member NCBI NM_001289125.3 NP_001276054.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001289125.3Link to Protein Sequence:NP_001276054.1Re-query CCDS DB by Nucleotide ID:NM_001289125Re-query CCDS DB by Protein ID:NP_001276054Link to BLAST:NP_001276054.1
Original member Current member NCBI NM_207585.3 NP_997468.1 Accepted alive Link to Nucleotide Sequence:NM_207585.3Link to Protein Sequence:NP_997468.1Re-query CCDS DB by Nucleotide ID:NM_207585Re-query CCDS DB by Protein ID:NP_997468Link to BLAST:NP_997468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276054.1 515 P48551-1 515 100% 0 0
NP_997468.1 515 P48551-1 515 100% 0 0

Chromosomal Locations for CCDS 13621.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 33241923 33241977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33243673 33243714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33244951 33245074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33246718 33246890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33248709 33248854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33252662 33252830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33260597 33260727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33262793 33263500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGCTTTTGAGCCAGAATGCCTTCATCTTCAGATCACTTAATTTGGTTCTCATGGTGTATATCAGCCTCG
TGTTTGGTATTTCATATGATTCGCCTGATTACACAGATGAATCTTGCACTTTCAAGATATCATTGCGAAA
TTTCCGGTCCATCTTATCATGGGAATTAAAAAACCACTCCATTGTACCAACTCACTATACATTGCTGTAT
ACAATCATGAGTAAACCAGAAGATTTGAAGGTGGTTAAGAACTGTGCAAATACCACAAGATCATTTTGTG
ACCTCACAGATGAGTGGAGAAGCACACACGAGGCCTATGTCACCGTCCTAGAAGGATTCAGCGGGAACAC
AACGTTGTTCAGTTGCTCACACAATTTCTGGCTGGCCATAGACATGTCTTTTGAACCACCAGAGTTTGAG
ATTGTTGGTTTTACCAACCACATTAATGTGATGGTGAAATTTCCATCTATTGTTGAGGAAGAATTACAGT
TTGATTTATCTCTCGTCATTGAAGAACAGTCAGAGGGAATTGTTAAGAAGCATAAACCCGAAATAAAAGG
AAACATGAGTGGAAATTTCACCTATATCATTGACAAGTTAATTCCAAACACGAACTACTGTGTATCTGTT
TATTTAGAGCACAGTGATGAGCAAGCAGTAATAAAGTCTCCCTTAAAATGCACCCTCCTTCCACCTGGCC
AGGAATCAGAATCAGCAGAATCTGCCAAAATAGGAGGAATAATTACTGTGTTTTTGATAGCATTGGTCTT
GACAAGCACCATAGTGACACTGAAATGGATTGGTTATATATGCTTAAGAAATAGCCTCCCCAAAGTCTTG
AATTTTCATAACTTTTTAGCCTGGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGGATATGGTGGAGG
TCATTTACATCAACAGAAAGAAGAAAGTGTGGGATTATAATTATGATGATGAAAGTGATAGCGATACTGA
GGCAGCGCCCAGGACAAGTGGCGGTGGCTATACCATGCATGGACTGACTGTCAGGCCTCTGGGTCAGGCC
TCTGCCACCTCTACAGAATCCCAGTTGATAGACCCGGAGTCCGAGGAGGAGCCTGACCTGCCTGAGGTTG
ATGTGGAGCTCCCCACGATGCCAAAGGACAGCCCTCAGCAGTTGGAACTCTTGAGTGGGCCCTGTGAGAG
GAGAAAGAGTCCACTCCAGGACCCTTTTCCCGAAGAGGACTACAGCTCCACGGAGGGGTCTGGGGGCAGA
ATTACCTTCAATGTGGACTTAAACTCTGTGTTTTTGAGAGTTCTTGATGACGAGGACAGTGACGACTTAG
AAGCCCCTCTGATGCTATCGTCTCATCTGGAAGAGATGGTTGACCCAGAGGATCCTGATAATGTGCAATC
AAACCATTTGCTGGCCAGCGGGGAAGGGACACAGCCAACCTTTCCCAGCCCCTCTTCAGAGGGCCTGTGG
TCCGAAGATGCTCCATCTGATCAAAGTGACACTTCTGAGTCAGATGTTGACCTTGGGGATGGTTATATAA
TGAGATGA

Translation (515 aa):
MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHSIVPTHYTLLY
TIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLFSCSHNFWLAIDMSFEPPEFE
IVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKKHKPEIKGNMSGNFTYIIDKLIPNTNYCVSV
YLEHSDEQAVIKSPLKCTLLPPGQESESAESAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVL
NFHNFLAWPFPNLPPLEAMDMVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQA
SATSTESQLIDPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPTFPSPSSEGLW
SEDAPSDQSDTSESDVDLGDGYIMR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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