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Report for CCDS24.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24.1 Public Homo sapiens 1 MXRA8 24 110 108 CCDS HistoryNCBI Gene:54587Re-query CCDS DB by CCDS ID:24.1Re-query CCDS DB by GeneID:54587See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309212.11 ENSP00000307887.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309212.11Link to Ensembl Protein Viewer:ENSP00000307887.6Re-query CCDS DB by Nucleotide ID:ENST00000309212Re-query CCDS DB by Protein ID:ENSP00000307887
Original member Current member NCBI NM_001282582.2 NP_001269511.1 Accepted alive Link to Nucleotide Sequence:NM_001282582.2Link to Protein Sequence:NP_001269511.1Re-query CCDS DB by Nucleotide ID:NM_001282582Re-query CCDS DB by Protein ID:NP_001269511Link to BLAST:NP_001269511.1
Original member Current member NCBI NM_032348.4 NP_115724.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032348.4Link to Protein Sequence:NP_115724.1Re-query CCDS DB by Nucleotide ID:NM_032348Re-query CCDS DB by Protein ID:NP_115724Link to BLAST:NP_115724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269511.1 442 Q9BRK3-1 442 100% 0 0
NP_115724.1 442 Q9BRK3-1 442 100% 0 0

Chromosomal Locations for CCDS 24.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1353604 1353629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1353848 1353928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1354030 1354106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1354193 1354232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1354354 1354509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1354682 1355152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1355244 1355345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1355450 1355752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1356681 1356704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1358456 1358504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGCGCTGCCATCCCGAATCCTGCTTTGGAAACTTGTGCTTCTGCAGAGCTCTGCTGTTCTCCTGCACT
CAGGGTCCTCGGTACCCGCCGCTGCTGGCAGCTCCGTGGTGTCCGAGTCCGCGGTGAGCTGGGAGGCGGG
CGCCCGGGCGGTGCTGCGCTGCCAGAGCCCGCGCATGGTGTGGACCCAGGACCGGCTGCACGACCGCCAG
CGCGTGCTCCACTGGGACCTGCGCGGCCCCGGGGGTGGCCCCGCGCGGCGCCTGCTGGACTTGTACTCGG
CGGGCGAGCAGCGCGTGTACGAGGCGCGGGACCGCGGCCGCCTGGAGCTCTCGGCCTCGGCCTTCGACGA
CGGCAACTTCTCGCTGCTCATCCGCGCGGTGGAGGAGACGGACGCGGGGCTGTACACCTGCAACCTGCAC
CATCACTACTGCCACCTCTACGAGAGCCTGGCCGTCCGCCTGGAGGTCACCGACGGCCCCCCGGCCACCC
CCGCCTACTGGGACGGCGAGAAGGAGGTGCTGGCGGTGGCGCGCGGCGCACCCGCGCTTCTGACCTGCGT
GAACCGCGGGCACGTGTGGACCGACCGGCACGTGGAGGAGGCTCAACAGGTGGTGCACTGGGACCGGCAG
CCGCCCGGGGTCCCGCACGACCGCGCGGACCGCCTGCTGGACCTCTACGCGTCGGGCGAGCGCCGCGCCT
ACGGGCCCCTTTTTCTGCGCGACCGCGTGGCTGTGGGCGCGGATGCCTTTGAGCGCGGTGACTTCTCACT
GCGTATCGAGCCGCTGGAGGTCGCCGACGAGGGCACCTACTCCTGCCACCTGCACCACCATTACTGTGGC
CTGCACGAACGCCGCGTCTTCCACCTGACGGTCGCCGAACCCCACGCGGAGCCGCCCCCCCGGGGCTCTC
CGGGCAACGGCTCCAGCCACAGCGGCGCCCCAGGCCCAGACCCCACACTGGCGCGCGGCCACAACGTCAT
CAATGTCATCGTCCCCGAGAGCCGAGCCCACTTCTTCCAGCAGCTGGGCTACGTGCTGGCCACGCTGCTG
CTCTTCATCCTGCTACTGGTCACTGTCCTCCTGGCCGCCCGCAGGCGCCGCGGAGGCTACGAATACTCGG
ACCAGAAGTCGGGAAAGTCAAAGGGGAAGGATGTTAACTTGGCGGAGTTCGCTGTGGCTGCAGGGGACCA
GATGCTTTACAGGAGTGAGGACATCCAGCTAGATTACAAAAACAACATCCTGAAGGAGAGGGCGGAGCTG
GCCCACAGCCCCCTGCCTGCCAAGTACATCGACCTAGACAAAGGGTTCCGGAAGGAGAACTGCAAATAG

Translation (442 aa):
MALPSRILLWKLVLLQSSAVLLHSGSSVPAAAGSSVVSESAVSWEAGARAVLRCQSPRMVWTQDRLHDRQ
RVLHWDLRGPGGGPARRLLDLYSAGEQRVYEARDRGRLELSASAFDDGNFSLLIRAVEETDAGLYTCNLH
HHYCHLYESLAVRLEVTDGPPATPAYWDGEKEVLAVARGAPALLTCVNRGHVWTDRHVEEAQQVVHWDRQ
PPGVPHDRADRLLDLYASGERRAYGPLFLRDRVAVGADAFERGDFSLRIEPLEVADEGTYSCHLHHHYCG
LHERRVFHLTVAEPHAEPPPRGSPGNGSSHSGAPGPDPTLARGHNVINVIVPESRAHFFQQLGYVLATLL
LFILLLVTVLLAARRRRGGYEYSDQKSGKSKGKDVNLAEFAVAAGDQMLYRSEDIQLDYKNNILKERAEL
AHSPLPAKYIDLDKGFRKENCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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