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Report for CCDS73845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73845.1 Public Homo sapiens 16 POLR3E 24 110 108 CCDS HistoryNCBI Gene:55718Re-query CCDS DB by CCDS ID:73845.1Re-query CCDS DB by GeneID:55718See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615879.4 ENSP00000484648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615879.4Link to Ensembl Protein Viewer:ENSP00000484648.1Re-query CCDS DB by Nucleotide ID:ENST00000615879Re-query CCDS DB by Protein ID:ENSP00000484648
Original member Current member NCBI NM_001258035.2 NP_001244964.1 Accepted alive Link to Nucleotide Sequence:NM_001258035.2Link to Protein Sequence:NP_001244964.1Re-query CCDS DB by Nucleotide ID:NM_001258035Re-query CCDS DB by Protein ID:NP_001244964Link to BLAST:NP_001244964.1

Chromosomal Locations for CCDS 73845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22308169 22308225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22308925 22309040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22309428 22309510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22313620 22313727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22314079 22314128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22315089 22315208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22316601 22316686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22316995 22317039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22317115 22317206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22318826 22318946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22322850 22322931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22324354 22324413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22324503 22324660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22325205 22325266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22325761 22326278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22328510 22328587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22332060 22332185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22333644 22333700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGACCTACGATGACATTCCGCACCTCTCAGCCAAGATCAAGCCCAAGCAGCAGAAGGTAGAGCTTGAGA
TGGCCATCGACACCCTGAACCCCAACTATTGCCGCAGCAAAGGGGAGCAGATTGCGCTGAACGTGGACGG
GGCCTGCGCCGACGAGACCAGCACGTATTCCTCGAAGCTGATGGACAAGCAGACCTTCTGCTCTTCCCAG
ACCACCAGTAACACATCCCGTTATGCCGCTGCACTCTACAGGCAAGGTGAGCTCCACCTGACACCTTTAC
ATGGCATCCTGCAGCTGCGGCCCAGCTTCTCCTACCTGGATAAGGCTGACGCCAAGCACCGGGAGAGGGA
GGCGGCCAACGAGGCAGGGGACTCTTCACAGGATGAGGCGGAAGACGATGTTAAGCAGATCACGGTGCGG
TTCTCCCGGCCGGAGTCAGAGCAGGCCCGCCAGCGCCGTGTGCAGTCCTATGAGTTCCTGCAGAAGAAGC
ACGCAGAGGAGCCCTGGGTCCACCTGCATTACTATGGCCTGAGGGACAGTCGCTCTGAGCATGAGCGTCA
GTACCTGCTGTGCCCCGGCTCAAGCGGGGTGGAGAACACGGAGCTCGTCAAGTCACCCAGTGAGTACCTG
ATGATGCTGATGCCACCCAGCCAGGAGGAGGAGAAAGACAAGCCTGTGGCCCCCAGCAACGTCCTGTCGA
TGGCCCAGCTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGATGAAGAATGTGAAGGTCATGCC
TTTTGCCAACTTGATGAGCCTCCTGGGCCCCTCCATCGATTCCGTGGCTGTTCTGCGGGGCATCCAGAAG
GTGGCGATGTTGGTCCAAGGGAACTGGGTGGTGAAGAGTGACATCCTATACCCCAAGGACTCGTCCAGCC
CTCACAGCGGCGTGCCTGCTGAGGTGCTCTGCAGGGGCCGAGACTTCGTTATGTGGAAGTTCACGCAGAG
CCGCTGGGTGGTTAGGAAAGAGGTGGCAACCGTGACCAAACTCTGCGCCGAGGATGTGAAGGACTTCCTG
GAGCACATGGCCGTGGTGAGGATCAACAAAGGCTGGGAGTTCATTCTGCCTTATGATGGGGAGTTCATCA
AGAAGCACCCGGATGTGGTCCAGCGGCAGCACATGCTGTGGACGGGTATCCAGGCCAAACTGGAAAAAGT
CTATAATCTTGTAAAGGAAACCATGCCAAAGAAGCCGGATGCACAATCAGGGCCTGCCGGGCTGGTCTGT
GGGGACCAGCGGATCCAAGTAGCCAAAACCAAGGCCCAGCAGAACCACGCGTTGCTGGAGCGGGAGCTGC
AGCGGCGGAAGGAGCAGCTGCGGGTGCCTGCGGTCCCGCCCGGTGTGCGGATCAAGGAGGAGCCCGTGAG
CGAGGAGGGCGAGGAGGACGAGGAGCAGGAGGCGGAGGAGGAGCCCATGGACACTTCCCCCAGCGGCCTC
CACAGCAAGCTGGCCAACGGGCTGCCTCTCGGGCGGGCTGCGGGCACAGACAGCTTCAACGGGCACCCGC
CCCAGGGCTGCGCCAGCACCCCTGTGGCTCGGGAACTGAAGGCCTTCGTGGAGGCCACCTTTCAGAGACA
GTTTGTGCTCACGCTGAGCGAACTCAAGCGCCTCTTCAATCTGCACTTGGCCAGCCTGCCCCCCGGCCAC
ACACTCTTCAGCGGCATCTCGGACCGCATGCTACAGGACACGGTGCTGGCCGCCGGTTGCAAGCAGATAC
TGGTGCCTTTTCCCCCCCAGACTGCTGCTTCCCCGGATGAGCAGAAGGTGTTTGCCCTCTGGGAGTCTGG
AGACATGAGTGATCAGCATCGACAGGTTTTGCTTGAAATTTTTTCCAAAAATTACCGGGTACGCCGAAAC
ATGATCCAGTCTCGGTTGACTCAAGAGTGTGGAGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAA
AGGACTGCTGTGTAAGCTATGGTGGCATGTGGTACCTTAAAGGGACAGTACAGTCTTGA

Translation (672 aa):
MTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQ
TTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVR
FSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYL
MMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQK
VAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFL
EHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVC
GDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGL
HSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGH
TLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRN
MIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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