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Report for CCDS27921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27921.1 Public Mus musculus 16 Vasn 23 108 98 CCDS HistoryNCBI Gene:246154Re-query CCDS DB by CCDS ID:27921.1Re-query CCDS DB by GeneID:246154See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038770.3 ENSMUSP00000045162.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038770.3Link to Ensembl Protein Viewer:ENSMUSP00000045162.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038770Re-query CCDS DB by Protein ID:ENSMUSP00000045162
Original member Current member NCBI NM_139307.3 NP_647468.2 Accepted alive Link to Nucleotide Sequence:NM_139307.3Link to Protein Sequence:NP_647468.2Re-query CCDS DB by Nucleotide ID:NM_139307Re-query CCDS DB by Protein ID:NP_647468Link to BLAST:NP_647468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647468.2 673 Q9CZT5 673 100% 0 0

Chromosomal Locations for CCDS 27921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4648191 4650212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGCACTCCAGGAGCTGCCTGCCACCTCTCCTGTTGTTGCTTCTGGTGCTCCTGGGGTCTGGAGTACAGG
GTTGCCCATCAGGCTGCCAGTGCAACCAGCCACAGACAGTCTTCTGCACTGCCCGTCAGGGAACCACAGT
GCCCCGAGACGTGCCACCTGACACAGTGGGCCTGTACATCTTTGAGAACGGCATCACGACACTTGATGTG
GGCTGTTTTGCTGGCCTTCCGGGCCTGCAGCTTCTGGACTTGTCACAGAACCAGATCACTAGCCTGCCCG
GGGGCATCTTTCAGCCACTTGTTAACCTCAGTAACCTGGACCTGACTGCCAACAAACTGCACGAGATCTC
CAACGAGACCTTCCGTGGCCTGCGGCGCCTGGAGCGCCTCTACCTGGGCAAGAACCGAATTCGCCACATC
CAACCGGGTGCCTTCGACGCGCTTGATCGCCTCCTGGAGCTCAAGCTGCCAGACAATGAGCTTCGGGTGT
TGCCCCCATTGCACTTGCCCCGCCTGCTGCTGCTTGACCTCAGCCACAACAGCATCCCAGCCCTGGAAGC
CGGAATACTGGATACCGCCAATGTAGAGGCATTGAGGTTGGCTGGCCTAGGGCTGCGGCAGCTGGATGAG
GGGCTTTTTGGCCGCCTTCTCAACCTCCATGACTTGGATGTTTCTGACAACCAGTTGGAGCATATGCCAT
CTGTGATTCAAGGCCTGCGTGGCCTGACACGCCTGCGGCTGGCTGGCAACACCCGTATTGCCCAGATACG
GCCCGAGGACCTCGCTGGTCTGACTGCCCTACAGGAATTGGATGTGAGCAACCTAAGCCTGCAGGCCCTG
CCCAGTGACCTCTCGAGTCTCTTTCCCCGCCTGCGCCTCTTAGCAGCTGCCAGGAACCCCTTCAACTGCT
TGTGCCCCTTGAGCTGGTTTGGTCCTTGGGTGCGTGAGAACCATGTTGTGTTGGCCAGCCCTGAGGAGAC
GCGTTGTCACTTTCCACCCAAGAATGCTGGCCGACTGCTCCTGGATCTGGATTATGCAGATTTTGGCTGC
CCAGTCACCACTACCACGGCCACAGTACCTACTATAAGGTCTACTATCAGGGAACCCACACTTTCAACTT
CTAGCCAAGCTCCCACCTGGCCCAGCCTCACAGAGCCAACTACCCAGGCCTCCACCGTACTATCGACTGC
CCCACCAACCATGAGGCCAGCTCCTCAGCCCCAGGACTGTCCAGCATCCATCTGCCTGAATGGTGGTAGC
TGCCGTTTGGGAGCAAGACACCACTGGGAGTGCCTATGCCCTGAGGGCTTCATTGGCCTGTACTGTGAGA
GTCCAGTGGAGCAAGGGATGAAGCCCAGCTCCATACCAGACACTCCAAGGCCCCCTCCACTGCTGCCTCT
CAGCATTGAGCCGGTGAGCCCCACCTCCTTGCGTGTGAAGCTGCAGCGCTACTTGCAGGGTAACACTGTG
CAGCTACGGAGCCTCCGGCTCACCTATCGCAACCTGTCTGGCCCTGACAAACGACTGGTGACATTACGGC
TGCCTGCTTCACTTGCAGAGTATACAGTCACCCAGCTGCGACCCAATGCCACCTATTCTATCTGTGTCAC
ACCCTTGGGAGCTGGACGGACACCTGAAGGTGAGGAGGCCTGTGGGGAGGCCAACACTTCCCAGGCAGTC
CGCTCTAACCATGCCCCAGTTACCCAGGCCCGTGAGGGCAACCTGCCACTCCTCATTGCGCCTGCCCTGG
CTGCTGTACTTCTGGCTGTGTTAGCCGCTGCAGGGGCAGCCTACTGTGTGCGGCGGGCACGGGCAACTTC
TACAGCTCAGGACAAAGGGCAGGTGGGGCCAGGGACTGGACCCCTGGAACTAGAGGGGGTGAAAGCCCCT
TTGGAGCCAGGCTCCAAGGCAACAGAGGGAGGTGGGGAGGCTTTGTCAGGTGGTCCTGAATGTGAGGTGC
CTCTTATGGGCTACCCAGGGCCCAGCCTTCAGGGGGTCCTCCCTGCTAAGCACTACATTTAG

Translation (673 aa):
MHSRSCLPPLLLLLLVLLGSGVQGCPSGCQCNQPQTVFCTARQGTTVPRDVPPDTVGLYIFENGITTLDV
GCFAGLPGLQLLDLSQNQITSLPGGIFQPLVNLSNLDLTANKLHEISNETFRGLRRLERLYLGKNRIRHI
QPGAFDALDRLLELKLPDNELRVLPPLHLPRLLLLDLSHNSIPALEAGILDTANVEALRLAGLGLRQLDE
GLFGRLLNLHDLDVSDNQLEHMPSVIQGLRGLTRLRLAGNTRIAQIRPEDLAGLTALQELDVSNLSLQAL
PSDLSSLFPRLRLLAAARNPFNCLCPLSWFGPWVRENHVVLASPEETRCHFPPKNAGRLLLDLDYADFGC
PVTTTTATVPTIRSTIREPTLSTSSQAPTWPSLTEPTTQASTVLSTAPPTMRPAPQPQDCPASICLNGGS
CRLGARHHWECLCPEGFIGLYCESPVEQGMKPSSIPDTPRPPPLLPLSIEPVSPTSLRVKLQRYLQGNTV
QLRSLRLTYRNLSGPDKRLVTLRLPASLAEYTVTQLRPNATYSICVTPLGAGRTPEGEEACGEANTSQAV
RSNHAPVTQAREGNLPLLIAPALAAVLLAVLAAAGAAYCVRRARATSTAQDKGQVGPGTGPLELEGVKAP
LEPGSKATEGGGEALSGGPECEVPLMGYPGPSLQGVLPAKHYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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