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Report for CCDS18526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18526.1 Public Mus musculus 4 Ptch2 23 108 98 CCDS HistoryNCBI Gene:19207Re-query CCDS DB by CCDS ID:18526.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030443.11 ENSMUSP00000030443.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030443.11Link to Ensembl Protein Viewer:ENSMUSP00000030443.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030443Re-query CCDS DB by Protein ID:ENSMUSP00000030443
Original member Current member NCBI NM_008958.3 NP_032984.1 Accepted alive Link to Nucleotide Sequence:NM_008958.3Link to Protein Sequence:NP_032984.1Re-query CCDS DB by Nucleotide ID:NM_008958Re-query CCDS DB by Protein ID:NP_032984Link to BLAST:NP_032984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032984.1 1182 O35595 1182 100% 0 0

Chromosomal Locations for CCDS 18526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117096356 117096427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117096847 117097039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117104733 117104922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117105030 117105099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117105234 117105325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117105935 117106130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117107899 117108020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117108155 117108302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117108383 117108514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117108604 117108759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117108856 117108948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117109293 117109418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117109512 117109630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117109737 117110085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117110195 117110507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117110599 117110741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117110827 117111007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117111125 117111405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117111515 117111652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117114012 117114154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117114243 117114342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117114640 117114831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3549 nt):
ATGGTTCGGCCACTGTCCCTTGGAGAGCTACCTCCCAGCTACACACCTCCAGCTCGGTCCTCCGCACCTC
ATATCCTAGCTGGGAGCCTGCAGGCTCCTCTCTGGCTTCGAGCTTACTTCCAAGGTCTACTCTTCTCCCT
GGGGTGCAGGATCCAGAAACACTGCGGCAAAGTGCTCTTCCTGGGACTGGTGGCCTTTGGGGCTCTGGCA
CTGGGTCTCCGAGTGGCTGTAATTGAGACAGACCTAGAACAGCTCTGGGTAGAAGTGGGCAGCAGGGTGA
GCCAGGAGCTGCACTACACCAAGGAGAAGCTGGGGGAAGAGGCTGCGTACACCTCCCAGATGTTGATTCA
GACTGCGCACCAGGAAGGGGGAAACGTCCTCACCCCCGAGGCACTTGACTTGCACCTCCAGGCGGCGCTC
ACTGCCAGTAAAGTCCAAGTATCACTCTATGGGAAATCCTGGGATTTGAACAAGATCTGCTACAAATCAG
GGGTTCCCCTTATTGAAAATGGGATGATCGAGCGGATGATTGAGAAGCTGTTTCCCTGTGTGATCCTCAC
CCCGCTTGACTGCTTCTGGGAAGGAGCCAAACTCCAAGGGGGCTCTGCCTACTTGCCGGGCCGCCCTGAT
ATCCAGTGGACCAACCTGGACCCTCAGCAGCTGCTCGAGGAGCTGGGCCCCTTTGCCTCTCTGGAGGGCT
TCCGGGAACTGCTAGATAAGGCACAGGTGGGCCAGGCCTATGTGGGGCGACCCTGTCTGGACCCTGATGA
CCCCCACTGTCCACCTAGTGCTCCCAACCGGCACAGCAGGCAGGCTCCCAATGTGGCTCAGGAGCTGAGT
GGGGGCTGCCATGGCTTCTCCCACAAGTTCATGCACTGGCAGGAGGAACTGCTACTAGGGGGCACAGCCA
GAGATCTCCAAGGACAGCTGCTGAGGGCAGAGGCCTTGCAGAGCACCTTCCTGCTCATGAGTCCCCGTCA
GCTGTACGAGCACTTCCGGGGCGACTACCAGACACATGACATCGGCTGGAGCGAGGAGCAGGCCAGCATG
GTGCTGCAGGCCTGGCAGAGGCGCTTTGTGCAGCTAGCCCAGGAGGCTCTGCCGGCCAACGCGTCCCAGC
AGATCCATGCCTTCTCCTCCACCACCCTGGATGACATCCTGCGCGCGTTCTCTGAAGTCAGCACCACCCG
TGTGGTAGGAGGCTATCTGCTTATGCTGGCCTATGCCTGCGTAACAATGCTGCGGTGGGACTGCGCCCAG
TCCCAGGGTGCCGTAGGTCTTGCTGGGGTGTTGCTGGTGGCCCTGGCGGTGGCCTCAGGTCTTGGGCTTT
GTGCCCTACTTGGCATCACTTTCAATGCTGCCACTACACAGGTGCTGCCCTTCTTGGCTCTGGGCATTGG
CGTGGATGACATCTTCCTGCTGGCGCATGCCTTCACAAAAGCCCCACCTGACACCCCTCTCCCAGAGCGT
ATGGGTGAGTGTTTGAGGAGCACGGGCACCAGCGTGGCACTCACATCCGTCAACAACATGGTCGCCTTTT
TCATGGCTGCCCTGGTTCCCATTCCTGCGCTGCGGGCCTTCTCCCTGCAGGCAGCCATAGTGGTCGGCTG
CAACTTTGCAGCGGTAATGCTCGTCTTCCCTGCCATCCTCAGCCTCGACCTGCGCCGGCGCCACCGCCAA
CGCCTGGACGTTCTCTGCTGCTTTTCTAGCCCCTGCTCCGCTCAGGTCATTCAGATGCTGCCCCAGGAGC
TAGGGGACAGAGCAGTACCAGTGGGCATTGCCCACCTGACTGCCACCGTGCAAGCCTTCACCCACTGCGA
AGCCAGCAGCCAGCATGTAGTCACCATTTTGCCTCCTCAAGCCCACCTGCTGTCTCCAGCTTCTGACCCA
CTGGGCTCCGAACTCTATAGCCCTGGAGGGTCTACACGGGACCTTCTCAGTCAGGAGGAGGGGACAGGGC
CACAGGCGGCCTGCAGGCCCCTGCTCTGTGCCCACTGGACTCTCGCCCATTTTGCCCGCTATCAGTTTGC
ACCTTTACTGCTCCAGACACGAGCCAAGGCCCTGGTGTTGCTGTTCTTTGGGGCTCTTTTGGGCCTGAGC
CTCTATGGAGCCACCTTGGTACAAGATGGGCTGGCCCTGACAGATGTGGTCCCTAGGGGCACCAAGGAAC
ATGCTTTCCTGAGCGCCCAGCTCAGGTACTTCTCCCTGTACGAGGTGGCTCTAGTGACACAGGGTGGCTT
TGACTACGCCCACTCCCAACGCGCCCTCTTTGATCTGCACCAGCGCTTCAGCTCCCTCAAGGCTGTGCTG
CCCCCACCTGCCACCCAGGCACCCCGCACCTGGCTTCACTACTACCGCAGCTGGCTACAGGGTATCCAGG
CTGCATTTGACCAAGACTGGGCTTCTGGGCGCATCACCTGCCACTCTTACCGCAACGGCTCAGAAGATGG
CGCCCTGGCCTACAAGCTGCTCATCCAAACCGGGAATGCCCAGGAGCCTCTGGATTTCAGCCAGCTGACC
ACAAGGAAACTGGTGGACAAGGAGGGACTCATTCCCCCAGAGCTCTTCTACATGGGGCTAACCGTGTGGG
TGAGCAGCGACCCCCTGGGCCTCGCAGCCTCTCAGGCCAACTTCTACCCCCCACCTCCAGAGTGGCTTCA
CGACAAATATGATACCACCGGGGAGAACCTTCGCATCCCGGCAGCCCAGCCCTTGGAGTTTGCCCAGTTC
CCCTTCCTGCTGCATGGACTCCAGAAGACTGCAGACTTTGTAGAAGCCATCGAAGGGGCCAGGGCGGCAT
GCACAGAGGCAGGCCAGGCAGGGGTGCATGCCTACCCCAGTGGCTCCCCCTTCCTCTTCTGGGAGCAGTA
TCTGGGTCTTCGGCGCTGCTTCCTGCTGGCAGTCTGCATCTTGCTGGTGTGCACCTTCCTCGTCTGTGCC
CTGCTTCTACTCAGCCCGTGGACAGCTGGCCTCATAGTGCTGGTCCTGGCAATGATGACTGTGGAGCTCT
TTGGTATCATGGGATTCCTGGGCATCAAACTGAGTGCCATCCCCGTGGTAATCCTCGTGGCCTCTATAGG
CATTGGTGTTGAATTCACAGTTCACGTGGCTCTGGGCTTCCTGACCAGCCATGGTAGCCGGAACCTGCGG
GCTGCTAGCGCTCTGGAACAGACCTTTGCCCCTGTGACTGATGGAGCTGTCTCCACCTTGCTGGGTCTGC
TCATGCTTGCTGGTTCTAACTTTGACTTCATCATAAGGTATTTCTTTGTGGTGCTGACGGTGCTGACACT
CTTGGGCCTGCTCCATGGACTCCTGCTGCTGCCTGTGCTGCTCTCTATCCTAGGCCCCCCGCCACAGGTG
GTGCAGGTATACAAGGAGAGTCCACAGACCCTAAACTCCGCTGCTCCACAGAGAGGTGGGCTCAGGTGGG
ACAGGCCCCCCACCCTGCCCCAGAGTTTTGCCAGAGTGACTACCTCCATGACTGTGGCCCTCCACCCACC
ACCTCTGCCTGGAGCATACGTCCACCCAGCCTCCGAGGAGCCCACATAG

Translation (1182 aa):
MVRPLSLGELPPSYTPPARSSAPHILAGSLQAPLWLRAYFQGLLFSLGCRIQKHCGKVLFLGLVAFGALA
LGLRVAVIETDLEQLWVEVGSRVSQELHYTKEKLGEEAAYTSQMLIQTAHQEGGNVLTPEALDLHLQAAL
TASKVQVSLYGKSWDLNKICYKSGVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPD
IQWTNLDPQQLLEELGPFASLEGFRELLDKAQVGQAYVGRPCLDPDDPHCPPSAPNRHSRQAPNVAQELS
GGCHGFSHKFMHWQEELLLGGTARDLQGQLLRAEALQSTFLLMSPRQLYEHFRGDYQTHDIGWSEEQASM
VLQAWQRRFVQLAQEALPANASQQIHAFSSTTLDDILRAFSEVSTTRVVGGYLLMLAYACVTMLRWDCAQ
SQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDIFLLAHAFTKAPPDTPLPER
MGECLRSTGTSVALTSVNNMVAFFMAALVPIPALRAFSLQAAIVVGCNFAAVMLVFPAILSLDLRRRHRQ
RLDVLCCFSSPCSAQVIQMLPQELGDRAVPVGIAHLTATVQAFTHCEASSQHVVTILPPQAHLLSPASDP
LGSELYSPGGSTRDLLSQEEGTGPQAACRPLLCAHWTLAHFARYQFAPLLLQTRAKALVLLFFGALLGLS
LYGATLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVALVTQGGFDYAHSQRALFDLHQRFSSLKAVL
PPPATQAPRTWLHYYRSWLQGIQAAFDQDWASGRITCHSYRNGSEDGALAYKLLIQTGNAQEPLDFSQLT
TRKLVDKEGLIPPELFYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPAAQPLEFAQF
PFLLHGLQKTADFVEAIEGARAACTEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCTFLVCA
LLLLSPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVHVALGFLTSHGSRNLR
AASALEQTFAPVTDGAVSTLLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLLHGLLLLPVLLSILGPPPQV
VQVYKESPQTLNSAAPQRGGLRWDRPPTLPQSFARVTTSMTVALHPPPLPGAYVHPASEEPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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