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Report for CCDS15715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15715.1 Public Mus musculus 2 Ptf1a 23 108 98 CCDS HistoryNCBI Gene:19213Re-query CCDS DB by CCDS ID:15715.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028068.2 ENSMUSP00000028068.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028068.2Link to Ensembl Protein Viewer:ENSMUSP00000028068.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028068Re-query CCDS DB by Protein ID:ENSMUSP00000028068
Original member Current member NCBI NM_018809.2 NP_061279.2 Accepted alive Link to Nucleotide Sequence:NM_018809.2Link to Protein Sequence:NP_061279.2Re-query CCDS DB by Nucleotide ID:NM_018809Re-query CCDS DB by Protein ID:NP_061279Link to BLAST:NP_061279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061279.2 324 Q9QX98 324 100% 0 0

Chromosomal Locations for CCDS 15715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 19445861 19446635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19446967 19447166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGACGCCGTACTCCTGGAGCACTTCCCCGGGGGCCTGGACACCTTCCCATCCCCTTACTTTGATGAGG
AA
GATTTCTTCACCGACCAGTCCTCTCGGGACCCGCTGGAGGACAGCGACGAGCTGCTGGGGGACGAGCA
A
GCAGAAGTAGAGTTCCTCAGCCACCAGCTACACGAATACTGCTACCGCGACGGGGCGTGCCTGCTGCTG
CAA
CCCGCGCCCTCGGCCGCCCCGCACGCGCTCGCCCCGCCGCCTTTGGGGGATCCTGGCGAGCCCGAGG
AC
AACGTCAGCTATTGCTGCGATGCAGGGGCTCCTCTCGCTGCCTTCCCCTACTCGCCTGGCTCACCGCC
C
TCGTGCCTCGCCTACCCGTGTGCCGCGGTGCTGTCCCCCGGTGCGCGGCTCGGTGGTTTGAACGGGGCT
GCG
GCAGCGGCGGCAGCAAGGCGGCGGCGACGCGTGCGCTCCGAGGCGGAGCTGCAGCAGCTGCGACAAG
CC
GCTAATGTGCGAGAGCGGCGCCGCATGCAGTCCATCAACGACGCCTTCGAGGGGCTGCGTTCGCACAT
C
CCCACGCTACCCTACGAAAAGCGCCTCTCCAAAGTAGACACGCTGCGCTTGGCCATAGGCTACATTAAC
TTC
CTCAGCGAGCTGGTGCAAGCCGACCTGCCGCTGCGCGGGAGTGGCGCAGGTGGTTGCGGGGGCCCAG
GT
GGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGG
C
ACCCGTTCACCCTCCCCCAGTGACCCGGATTATGGTCTCCCTCCTCTTGCAGGGCACTCTCTTTCCTGG
ACT
GATGAAAAACAGCTCAAAGAACAAAATATCATCCGTACAGCTAAAGTGTGGACCCCAGAGGACCCCA
GA
AAACTCAACAGTAAATCTTTCGACAACATAGAGAACGAACCACCCTTTGAGTTTGTGTCCTGA


Translation (324 aa):
MDAVLLEHFPGGLDTFPSPYFDEEDFFTDQSSRDPLEDSDELLGDEQAEVEFLSHQLHEYCYRDGACLLL
Q
PAPSAAPHALAPPPLGDPGEPEDNVSYCCDAGAPLAAFPYSPGSPPSCLAYPCAAVLSPGARLGGLNGA
A
AAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYIN
F
LSELVQADLPLRGSGAGGCGGPGGSRHLGEDSPGNQAQKVIICHRGT
RSPSPSDPDYGLPPLAGHSLSW
T
DEKQLKEQNIIRTAKVWTPEDPRKLNSKSFDNIENEPPFEFVS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser