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Report for CCDS27519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27519.1 Public Mus musculus 15 Ptp4a3 23 108 98 CCDS HistoryNCBI Gene:19245Re-query CCDS DB by CCDS ID:27519.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053232.7 ENSMUSP00000060956.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053232.7Link to Ensembl Protein Viewer:ENSMUSP00000060956.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053232Re-query CCDS DB by Protein ID:ENSMUSP00000060956
Original member Current member EBI ENSMUST00000163582.8 ENSMUSP00000131281.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163582.8Link to Ensembl Protein Viewer:ENSMUSP00000131281.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163582Re-query CCDS DB by Protein ID:ENSMUSP00000131281
Original member Current member EBI ENSMUST00000165541.7 ENSMUSP00000132097.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165541.7Link to Ensembl Protein Viewer:ENSMUSP00000132097.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165541Re-query CCDS DB by Protein ID:ENSMUSP00000132097
Original member Current member EBI ENSMUST00000230177.1 ENSMUSP00000154829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230177.1Link to Ensembl Protein Viewer:ENSMUSP00000154829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230177Re-query CCDS DB by Protein ID:ENSMUSP00000154829
Original member NCBI NM_001166388.1 NP_001159860.1 Updated not alive Link to Nucleotide Sequence:NM_001166388.1Link to Protein Sequence:NP_001159860.1Re-query CCDS DB by Nucleotide ID:NM_001166388Re-query CCDS DB by Protein ID:NP_001159860
Current member NCBI NM_001166388.2 NP_001159860.1 Accepted alive Link to Nucleotide Sequence:NM_001166388.2Link to Protein Sequence:NP_001159860.1Re-query CCDS DB by Nucleotide ID:NM_001166388Re-query CCDS DB by Protein ID:NP_001159860Link to BLAST:NP_001159860.1
Original member NCBI NM_001166389.1 NP_001159861.1 Updated not alive Link to Nucleotide Sequence:NM_001166389.1Link to Protein Sequence:NP_001159861.1Re-query CCDS DB by Nucleotide ID:NM_001166389Re-query CCDS DB by Protein ID:NP_001159861
Current member NCBI NM_001166389.2 NP_001159861.1 Accepted alive Link to Nucleotide Sequence:NM_001166389.2Link to Protein Sequence:NP_001159861.1Re-query CCDS DB by Nucleotide ID:NM_001166389Re-query CCDS DB by Protein ID:NP_001159861Link to BLAST:NP_001159861.1
Original member NCBI NM_001357591.1 NP_001344520.1 Updated not alive Link to Nucleotide Sequence:NM_001357591.1Link to Protein Sequence:NP_001344520.1Re-query CCDS DB by Nucleotide ID:NM_001357591Re-query CCDS DB by Protein ID:NP_001344520
Current member NCBI NM_001357591.2 NP_001344520.1 Accepted alive Link to Nucleotide Sequence:NM_001357591.2Link to Protein Sequence:NP_001344520.1Re-query CCDS DB by Nucleotide ID:NM_001357591Re-query CCDS DB by Protein ID:NP_001344520Link to BLAST:NP_001344520.1
Original member NCBI NM_008975.3 NP_033001.2 Updated not alive Link to Nucleotide Sequence:NM_008975.3Link to Protein Sequence:NP_033001.2Re-query CCDS DB by Nucleotide ID:NM_008975Re-query CCDS DB by Protein ID:NP_033001
Current member NCBI NM_008975.4 NP_033001.2 Accepted alive Link to Nucleotide Sequence:NM_008975.4Link to Protein Sequence:NP_033001.2Re-query CCDS DB by Nucleotide ID:NM_008975Re-query CCDS DB by Protein ID:NP_033001Link to BLAST:NP_033001.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159860.1 173 Q9D658 173 100% 0 0
NP_001159861.1 173 Q9D658 173 100% 0 0
NP_001344520.1 173 Q9D658 173 100% 0 0
NP_033001.2 173 Q9D658 173 100% 0 0

Chromosomal Locations for CCDS 27519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 73751923 73752027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73753756 73753848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73755294 73755424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73756028 73756102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73756797 73756914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCCCGCATGAACCGGCCTGCGCCTGTGGAGGTGAGCTACCGGCACATGCGCTTCCTCATCACCCACA
ACCCCAGCAATGCCACCCTCAGCACGTTCATCGAGGACCTGAAGAAGTACGGGGCTACCACTGTGGTGCG
CGTGTGTGAAGTGACCTATGACAAGACCCCCCTGGAGAAGGACGGCATCACTGTTGTGGACTGGCCCTTT
GATGATGGAGCGCCCCCTCCTGGCAAAGTGGTAGAGGACTGGCTGAGCCTGCTGAAGGCCAAGTTCTACA
ATGACCCGGGAAGCTGCGTAGCTGTGCACTGTGTGGCGGGCCTGGGAAGGGCCCCAGTGCTCGTGGCTCT
CGCCCTCATCGAGAGCGGGATGAAGTACGAGGACGCCATCCAGTTCATCCGACAGAAGCGCCGTGGGGCC
ATCAACAGCAAGCAGCTCACCTACCTGGAGAAGTACCGGCCTAAGCAGAGACTGAGGTTCAAAGACCCAC
ACACGCACAAGACCAGATGCTGCGTCATGTAG

Translation (173 aa):
MARMNRPAPVEVSYRHMRFLITHNPSNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPF
DDGAPPPGKVVEDWLSLLKAKFYNDPGSCVAVHCVAGLGRAPVLVALALIESGMKYEDAIQFIRQKRRGA
INSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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