NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21294.1 Public Mus musculus 7 Ptpn5 23 108 98 CCDS HistoryNCBI Gene:19259Re-query CCDS DB by CCDS ID:21294.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033142.12 ENSMUSP00000033142.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033142.12Link to Ensembl Protein Viewer:ENSMUSP00000033142.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033142Re-query CCDS DB by Protein ID:ENSMUSP00000033142
Original member Current member EBI ENSMUST00000102626.9 ENSMUSP00000099686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102626.9Link to Ensembl Protein Viewer:ENSMUSP00000099686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102626Re-query CCDS DB by Protein ID:ENSMUSP00000099686
Original member NCBI NM_001163565.1 NP_001157037.1 Updated not alive Link to Nucleotide Sequence:NM_001163565.1Link to Protein Sequence:NP_001157037.1Re-query CCDS DB by Nucleotide ID:NM_001163565Re-query CCDS DB by Protein ID:NP_001157037
Current member NCBI NM_001163565.2 NP_001157037.1 Accepted alive Link to Nucleotide Sequence:NM_001163565.2Link to Protein Sequence:NP_001157037.1Re-query CCDS DB by Nucleotide ID:NM_001163565Re-query CCDS DB by Protein ID:NP_001157037Link to BLAST:NP_001157037.1
Original member NCBI NM_013643.2 NP_038671.2 Updated not alive Link to Nucleotide Sequence:NM_013643.2Link to Protein Sequence:NP_038671.2Re-query CCDS DB by Nucleotide ID:NM_013643Re-query CCDS DB by Protein ID:NP_038671
Current member NCBI NM_013643.3 NP_038671.2 Accepted alive Link to Nucleotide Sequence:NM_013643.3Link to Protein Sequence:NP_038671.2Re-query CCDS DB by Nucleotide ID:NM_013643Re-query CCDS DB by Protein ID:NP_038671Link to BLAST:NP_038671.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157037.1 541 P54830-1 541 100% 0 0
NP_038671.2 541 P54830-1 541 100% 0 0

Chromosomal Locations for CCDS 21294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 47078825 47078918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47079246 47079359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47079447 47079607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47081863 47081973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47082761 47082898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47083086 47083165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47086041 47086125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47088490 47088679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47089777 47090018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47090421 47090504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47090727 47090834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47091377 47091570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47112721 47112745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGTGCTGTAGTGAGAGGCTGTTGGGTCTCCCCCAGCCGGTAGAGATGGAAGCACCGGACGAGGCCGAAG
GACTCCCCAGCAAGCAGAAAGAGATGCCACCACCCCCGCCACCCTCACCGCCCTCTGAGCCAGCTCAGAA
GCTGCCACCTCAAGGCGCTGGGAGCCACTCCCTCACCGTCAGAAGCAGCCTGTGCCTGTTTGCTGCCTCT
CAGTTCCTGCTTGCCTGTGGGGTGCTCTGGCTCAGTGGCCATGGCCACTCCTGGCTGCAGAACACCACAG
ACCTCATCTCCTCCTCGCTCACAGTGTTGAACCATCTGGGACCTGTGGCCTGGCTGGGTTCTGGGACCTG
GGGGATACCAAGTCTGCTGCTAGTCTCTCTGACTGTGAGCCTGGTCATCGTCACCACCCTGGTGTGGCAC
CTCCTCAAGGCACCCCCAGAGCCACCTGCCCCACTGCCCCCAGAGGACAGGCGTCAATCAGTGAGCCGGC
AGCCTTCCTTCACCTACTCAGAGTGGATGGAGGAGAAGGTAGAGGATGACTTCCTGGACCTGGACGCGGT
GCCCGAGACACCTGTGTTTGACTGTGTGATGGACATCAAGCCTGAGACTGATCCTGCCTCATTGACTGTC
AAGTCCATGGGTCTACAGGAGAGGAGAGGATCCAATGTCTCCTTGACCCTGGACATGTGTACTCCTGGCT
GCAATGAGGAGGGCTTCGGCTACCTGGTGTCTCCACGAGAAGAGTCAGCCCATGAGTATCTGCTCAGCGC
CTCCCGTGTCCTCCGGGCAGAAGAGCTACATGAAAAGGCTCTGGACCCTTTCTTGCTGCAGGCGGAATTC
TTTGAAATCCCCATGAACTTTGTGGATCCAAAAGAGTATGACATCCCAGGGCTGGTGCGGAAGAATCGGT
ACAAAACCATCCTTCCCAATCCTCACAGCAGGGTACGTCTGACGTCACCAGACCCTGAAGATCCTCTGAG
TTCCTACATCAATGCCAACTACATCCGGGGCTACAGTGGGGAGGAGAAGGTGTACATCGCCACGCAGGGA
CCCATCGTCAGCACTGTGGCCGACTTTTGGCGCATGGTGTGGCAGGAGCGCACACCCATCATCGTCATGA
TCACCAACATCGAGGAGATGAACGAGAAGTGCACAGAATACTGGCCAGAAGAGCAGGTGGTCCATGACGG
CGTGGAGATCACCGTGCAGAAAGTCATCCACACGGAGGACTACCGGCTGCGACTCATCTCCCTCAGGAGA
GGGACTGAAGAGCGAAGCTTGAAGCATTACTGGTTCACATCCTGGCCTGACCAGAAGACCCCCGACCGGG
CTCCCCCACTCCTGCACCTGGTACGGGAAGTGGAGGAGGCAGCCCAACAAGAGGGACCCCATTGTTCCCC
AATCATCGTTCACTGCAGTGCAGGGATTGGGAGAACTGGCTGCTTCATTGCCACCAGCATCTGCTGCCAG
CAGCTGCGACGTGAGGGCGTGGTGGACATCCTGAAGACCACGTGCCAGCTCCGTCAGGACAGGGGTGGCA
TGATCCAGACATGCGAACAGTACCAGTTTGTGCACCACGCCATGAGCCTCTATGAGAAGCAGCTGTCCCT
CCAGTCCTCAGAGTGA

Translation (541 aa):
MCCSERLLGLPQPVEMEAPDEAEGLPSKQKEMPPPPPPSPPSEPAQKLPPQGAGSHSLTVRSSLCLFAAS
QFLLACGVLWLSGHGHSWLQNTTDLISSSLTVLNHLGPVAWLGSGTWGIPSLLLVSLTVSLVIVTTLVWH
LLKAPPEPPAPLPPEDRRQSVSRQPSFTYSEWMEEKVEDDFLDLDAVPETPVFDCVMDIKPETDPASLTV
KSMGLQERRGSNVSLTLDMCTPGCNEEGFGYLVSPREESAHEYLLSASRVLRAEELHEKALDPFLLQAEF
FEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVRLTSPDPEDPLSSYINANYIRGYSGEEKVYIATQG
PIVSTVADFWRMVWQERTPIIVMITNIEEMNEKCTEYWPEEQVVHDGVEITVQKVIHTEDYRLRLISLRR
GTEERSLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCSPIIVHCSAGIGRTGCFIATSICCQ
QLRREGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHAMSLYEKQLSLQSSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH