NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3291.1 Public Homo sapiens 3 LPP 24 110 108 CCDS HistoryNCBI Gene:4026Re-query CCDS DB by CCDS ID:3291.1Re-query CCDS DB by GeneID:4026See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617246.5 ENSP00000478901.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617246.5Link to Ensembl Protein Viewer:ENSP00000478901.1Re-query CCDS DB by Nucleotide ID:ENST00000617246Re-query CCDS DB by Protein ID:ENSP00000478901
Original member Current member EBI ENST00000640853.1 ENSP00000491657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640853.1Link to Ensembl Protein Viewer:ENSP00000491657.1Re-query CCDS DB by Nucleotide ID:ENST00000640853Re-query CCDS DB by Protein ID:ENSP00000491657
Original member Current member NCBI NM_001167671.3 NP_001161143.1 Accepted alive Link to Nucleotide Sequence:NM_001167671.3Link to Protein Sequence:NP_001161143.1Re-query CCDS DB by Nucleotide ID:NM_001167671Re-query CCDS DB by Protein ID:NP_001161143Link to BLAST:NP_001161143.1
Original member Current member NCBI NM_001375455.1 NP_001362384.1 Accepted alive Link to Nucleotide Sequence:NM_001375455.1Link to Protein Sequence:NP_001362384.1Re-query CCDS DB by Nucleotide ID:NM_001375455Re-query CCDS DB by Protein ID:NP_001362384Link to BLAST:NP_001362384.1
Original member Current member NCBI NM_001375456.1 NP_001362385.1 Accepted alive Link to Nucleotide Sequence:NM_001375456.1Link to Protein Sequence:NP_001362385.1Re-query CCDS DB by Nucleotide ID:NM_001375456Re-query CCDS DB by Protein ID:NP_001362385Link to BLAST:NP_001362385.1
Original member Current member NCBI NM_001375457.1 NP_001362386.1 Accepted alive Link to Nucleotide Sequence:NM_001375457.1Link to Protein Sequence:NP_001362386.1Re-query CCDS DB by Nucleotide ID:NM_001375457Re-query CCDS DB by Protein ID:NP_001362386Link to BLAST:NP_001362386.1
Original member Current member NCBI NM_001375458.1 NP_001362387.1 Accepted alive Link to Nucleotide Sequence:NM_001375458.1Link to Protein Sequence:NP_001362387.1Re-query CCDS DB by Nucleotide ID:NM_001375458Re-query CCDS DB by Protein ID:NP_001362387Link to BLAST:NP_001362387.1
Original member Current member NCBI NM_001375459.1 NP_001362388.1 Accepted alive Link to Nucleotide Sequence:NM_001375459.1Link to Protein Sequence:NP_001362388.1Re-query CCDS DB by Nucleotide ID:NM_001375459Re-query CCDS DB by Protein ID:NP_001362388Link to BLAST:NP_001362388.1
Original member Current member NCBI NM_001375460.1 NP_001362389.1 Accepted alive Link to Nucleotide Sequence:NM_001375460.1Link to Protein Sequence:NP_001362389.1Re-query CCDS DB by Nucleotide ID:NM_001375460Re-query CCDS DB by Protein ID:NP_001362389Link to BLAST:NP_001362389.1
Original member Current member NCBI NM_001375461.1 NP_001362390.1 Accepted alive Link to Nucleotide Sequence:NM_001375461.1Link to Protein Sequence:NP_001362390.1Re-query CCDS DB by Nucleotide ID:NM_001375461Re-query CCDS DB by Protein ID:NP_001362390Link to BLAST:NP_001362390.1
Original member Current member NCBI NM_001375462.1 NP_001362391.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375462.1Link to Protein Sequence:NP_001362391.1Re-query CCDS DB by Nucleotide ID:NM_001375462Re-query CCDS DB by Protein ID:NP_001362391Link to BLAST:NP_001362391.1
Original member Current member NCBI NM_001375463.1 NP_001362392.1 Accepted alive Link to Nucleotide Sequence:NM_001375463.1Link to Protein Sequence:NP_001362392.1Re-query CCDS DB by Nucleotide ID:NM_001375463Re-query CCDS DB by Protein ID:NP_001362392Link to BLAST:NP_001362392.1
Original member Current member NCBI NM_001375464.1 NP_001362393.1 Accepted alive Link to Nucleotide Sequence:NM_001375464.1Link to Protein Sequence:NP_001362393.1Re-query CCDS DB by Nucleotide ID:NM_001375464Re-query CCDS DB by Protein ID:NP_001362393Link to BLAST:NP_001362393.1
Original member Current member NCBI NM_001375465.1 NP_001362394.1 Accepted alive Link to Nucleotide Sequence:NM_001375465.1Link to Protein Sequence:NP_001362394.1Re-query CCDS DB by Nucleotide ID:NM_001375465Re-query CCDS DB by Protein ID:NP_001362394Link to BLAST:NP_001362394.1
Original member Current member NCBI NM_001387663.1 NP_001374592.1 Accepted alive Link to Nucleotide Sequence:NM_001387663.1Link to Protein Sequence:NP_001374592.1Re-query CCDS DB by Nucleotide ID:NM_001387663Re-query CCDS DB by Protein ID:NP_001374592Link to BLAST:NP_001374592.1
Original member Current member NCBI NM_001387664.1 NP_001374593.1 Accepted alive Link to Nucleotide Sequence:NM_001387664.1Link to Protein Sequence:NP_001374593.1Re-query CCDS DB by Nucleotide ID:NM_001387664Re-query CCDS DB by Protein ID:NP_001374593Link to BLAST:NP_001374593.1
Original member Current member NCBI NM_001387665.1 NP_001374594.1 Accepted alive Link to Nucleotide Sequence:NM_001387665.1Link to Protein Sequence:NP_001374594.1Re-query CCDS DB by Nucleotide ID:NM_001387665Re-query CCDS DB by Protein ID:NP_001374594Link to BLAST:NP_001374594.1
Original member Current member NCBI NM_001387666.1 NP_001374595.1 Accepted alive Link to Nucleotide Sequence:NM_001387666.1Link to Protein Sequence:NP_001374595.1Re-query CCDS DB by Nucleotide ID:NM_001387666Re-query CCDS DB by Protein ID:NP_001374595Link to BLAST:NP_001374595.1
Original member Current member NCBI NM_001387667.1 NP_001374596.1 Accepted alive Link to Nucleotide Sequence:NM_001387667.1Link to Protein Sequence:NP_001374596.1Re-query CCDS DB by Nucleotide ID:NM_001387667Re-query CCDS DB by Protein ID:NP_001374596Link to BLAST:NP_001374596.1
Original member Current member NCBI NM_001387668.1 NP_001374597.1 Accepted alive Link to Nucleotide Sequence:NM_001387668.1Link to Protein Sequence:NP_001374597.1Re-query CCDS DB by Nucleotide ID:NM_001387668Re-query CCDS DB by Protein ID:NP_001374597Link to BLAST:NP_001374597.1
Original member Current member NCBI NM_001387669.1 NP_001374598.1 Accepted alive Link to Nucleotide Sequence:NM_001387669.1Link to Protein Sequence:NP_001374598.1Re-query CCDS DB by Nucleotide ID:NM_001387669Re-query CCDS DB by Protein ID:NP_001374598Link to BLAST:NP_001374598.1
Original member Current member NCBI NM_001387670.1 NP_001374599.1 Accepted alive Link to Nucleotide Sequence:NM_001387670.1Link to Protein Sequence:NP_001374599.1Re-query CCDS DB by Nucleotide ID:NM_001387670Re-query CCDS DB by Protein ID:NP_001374599Link to BLAST:NP_001374599.1
Original member Current member NCBI NM_001387671.1 NP_001374600.1 Accepted alive Link to Nucleotide Sequence:NM_001387671.1Link to Protein Sequence:NP_001374600.1Re-query CCDS DB by Nucleotide ID:NM_001387671Re-query CCDS DB by Protein ID:NP_001374600Link to BLAST:NP_001374600.1
Original member Current member NCBI NM_001387672.1 NP_001374601.1 Accepted alive Link to Nucleotide Sequence:NM_001387672.1Link to Protein Sequence:NP_001374601.1Re-query CCDS DB by Nucleotide ID:NM_001387672Re-query CCDS DB by Protein ID:NP_001374601Link to BLAST:NP_001374601.1
Original member Current member NCBI NM_001387673.1 NP_001374602.1 Accepted alive Link to Nucleotide Sequence:NM_001387673.1Link to Protein Sequence:NP_001374602.1Re-query CCDS DB by Nucleotide ID:NM_001387673Re-query CCDS DB by Protein ID:NP_001374602Link to BLAST:NP_001374602.1
Original member Current member NCBI NM_001387674.1 NP_001374603.1 Accepted alive Link to Nucleotide Sequence:NM_001387674.1Link to Protein Sequence:NP_001374603.1Re-query CCDS DB by Nucleotide ID:NM_001387674Re-query CCDS DB by Protein ID:NP_001374603Link to BLAST:NP_001374603.1
Original member Current member NCBI NM_005578.5 NP_005569.1 Accepted alive Link to Nucleotide Sequence:NM_005578.5Link to Protein Sequence:NP_005569.1Re-query CCDS DB by Nucleotide ID:NM_005578Re-query CCDS DB by Protein ID:NP_005569Link to BLAST:NP_005569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161143.1 612 Q93052 612 100% 0 0
NP_001362384.1 612 Q93052 612 100% 0 0
NP_001362385.1 612 Q93052 612 100% 0 0
NP_001362386.1 612 Q93052 612 100% 0 0
NP_001362387.1 612 Q93052 612 100% 0 0
NP_001362388.1 612 Q93052 612 100% 0 0
NP_001362389.1 612 Q93052 612 100% 0 0
NP_001362390.1 612 Q93052 612 100% 0 0
NP_001362391.1 612 Q93052 612 100% 0 0
NP_001362392.1 612 Q93052 612 100% 0 0
NP_001362393.1 612 Q93052 612 100% 0 0
NP_001362394.1 612 Q93052 612 100% 0 0
NP_001374592.1 612 Q93052 612 100% 0 0
NP_001374593.1 612 Q93052 612 100% 0 0
NP_001374594.1 612 Q93052 612 100% 0 0
NP_001374595.1 612 Q93052 612 100% 0 0
NP_001374596.1 612 Q93052 612 100% 0 0
NP_001374597.1 612 Q93052 612 100% 0 0
NP_001374598.1 612 Q93052 612 100% 0 0
NP_001374599.1 612 Q93052 612 100% 0 0
NP_001374600.1 612 Q93052 612 100% 0 0
NP_001374601.1 612 Q93052 612 100% 0 0
NP_001374602.1 612 Q93052 612 100% 0 0
NP_001374603.1 612 Q93052 612 100% 0 0
NP_005569.1 612 Q93052 612 100% 0 0

Chromosomal Locations for CCDS 3291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 188406121 188406313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188484592 188484704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188524665 188524787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188609161 188609844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188708267 188708393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188760113 188760282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188866200 188866378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188872643 188872763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 188874351 188874479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGTCTCACCCATCTTGGCTGCCACCCAAAAGCACTGGTGAGCCCCTCGGCCATGTGCCTGCACGGATGG
AGACCACCCATTCCTTTGGGAACCCCAGCATTTCAGTGTCTACACAACAGCCACCCAAAAAGTTTGCCCC
GGTAGTTGCTCCAAAACCTAAGTACAACCCATACAAACAACCTGGAGGTGAGGGTGATTTTCTTCCACCC
CCACCTCCACCTCTAGATGATTCCAGTGCCCTTCCATCTATCTCTGGAAACTTTCCTCCTCCACCACCTC
TTGATGAAGAGGCTTTCAAAGTACAGGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCAGCCT
GGACGCTGAGATTGACTCCTTGACCAGCATCTTGGCTGACCTTGAGTGCAGCTCCCCCTATAAGCCTCGG
CCTCCACAGAGCTCCACTGGTTCAACAGCCTCTCCTCCAGTTTCGACCCCAGTCACAGGACACAAGAGAA
TGGTCATCCCGAACCAACCCCCTCTAACAGCAACCAAGAAGTCTACATTGAAACCACAGCCTGCACCCCA
GGCTGGACCCATCCCTGTGGCTCCAATCGGAACACTCAAACCCCAGCCTCAGCCAGTCCCAGCCTCCTAC
ACCACGGCCTCCACTTCTTCAAGGCCTACCTTTAATGTGCAGGTGAAGTCAGCCCAGCCCAGCCCTCATT
ATATGGCTGCCCCTTCATCAGGACAAATTTATGGCTCAGGGCCCCAGGGCTATAACACTCAGCCAGTTCC
TGTCTCTGGGCAGTGTCCACCTCCTTCAACACGGGGAGGCATGGATTATGCCTACATTCCACCACCAGGA
CTTCAGCCGGAGCCTGGGTATGGGTATGCCCCCAACCAGGGACGCTATTATGAAGGCTACTATGCAGCAG
GGCCAGGCTATGGGGGCAGAAATGACTCTGACCCTACCTATGGTCAACAAGGTCACCCAAATACCTGGAA
ACGGGAACCAGGGTACACTCCTCCTGGAGCAGGGAACCAGAACCCTCCTGGGATGTATCCAGTCACTGGT
CCCAAGAAGACCTATATCACAGATCCTGTTTCAGCCCCCTGTGCGCCACCATTGCAGCCAAAGGGTGGCC
ATTCAGGGCAACTGGGGCCTTCGTCAGTTGCCCCTTCATTCCGCCCAGAGGATGAGCTTGAGCACCTGAC
CAAAAAGATGCTGTATGACATGGAAAATCCACCTGCTGACGAATACTTTGGCCGCTGTGCTCGCTGTGGA
GAAAACGTAGTTGGGGAAGGTACAGGATGCACTGCCATGGATCAGGTCTTCCACGTGGATTGTTTTACCT
GCATCATCTGCAACAACAAGCTCCGAGGGCAGCCATTCTATGCTGTGGAAAAGAAAGCATACTGCGAGCC
CTGCTACATTAATACTCTGGAGCAGTGCAATGTGTGTTCCAAGCCCATCATGGAGCGGATTCTCCGAGCC
ACCGGGAAGGCCTATCATCCTCACTGTTTCACCTGCGTGATGTGCCACCGCAGCCTGGATGGGATCCCAT
TCACTGTGGATGCTGGCGGGCTCATTCACTGCATTGAGGACTTCCACAAGAAATTTGCCCCGCGATGTTC
TGTGTGCAAGGAGCCTATTATGCCAGCCCCGGGCCAGGAGGAGACTGTCCGTATTGTGGCTTTGGATCGA
GATTTCCATGTTCACTGCTACCGATGCGAGGATTGCGGTGGTCTCCTGTCTGAAGGAGATAACCAAGGCT
GCTACCCCTTGGATGGGCACATCCTCTGCAAGACCTGCAACTCTGCCCGCATCAGGGTGTTGACCGCCAA
GGCGAGCACTGACCTTTAG

Translation (612 aa):
MSHPSWLPPKSTGEPLGHVPARMETTHSFGNPSISVSTQQPPKKFAPVVAPKPKYNPYKQPGGEGDFLPP
PPPPLDDSSALPSISGNFPPPPPLDEEAFKVQGNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKPR
PPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTLKPQPAPQAGPIPVAPIGTLKPQPQPVPASY
TTASTSSRPTFNVQVKSAQPSPHYMAAPSSGQIYGSGPQGYNTQPVPVSGQCPPPSTRGGMDYAYIPPPG
LQPEPGYGYAPNQGRYYEGYYAAGPGYGGRNDSDPTYGQQGHPNTWKREPGYTPPGAGNQNPPGMYPVTG
PKKTYITDPVSAPCAPPLQPKGGHSGQLGPSSVAPSFRPEDELEHLTKKMLYDMENPPADEYFGRCARCG
ENVVGEGTGCTAMDQVFHVDCFTCIICNNKLRGQPFYAVEKKAYCEPCYINTLEQCNVCSKPIMERILRA
TGKAYHPHCFTCVMCHRSLDGIPFTVDAGGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALDR
DFHVHCYRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARIRVLTAKASTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH