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Report for CCDS665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
665.1 Public Homo sapiens 1 CRYZ 24 110 108 CCDS HistoryNCBI Gene:1429Re-query CCDS DB by CCDS ID:665.1Re-query CCDS DB by GeneID:1429See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 665.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340866.10 ENSP00000339399.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340866.10Link to Ensembl Protein Viewer:ENSP00000339399.5Re-query CCDS DB by Nucleotide ID:ENST00000340866Re-query CCDS DB by Protein ID:ENSP00000339399
Original member Current member EBI ENST00000417775.5 ENSP00000399805.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417775.5Link to Ensembl Protein Viewer:ENSP00000399805.1Re-query CCDS DB by Nucleotide ID:ENST00000417775Re-query CCDS DB by Protein ID:ENSP00000399805
Original member Current member NCBI NM_001130042.2 NP_001123514.1 Accepted alive Link to Nucleotide Sequence:NM_001130042.2Link to Protein Sequence:NP_001123514.1Re-query CCDS DB by Nucleotide ID:NM_001130042Re-query CCDS DB by Protein ID:NP_001123514Link to BLAST:NP_001123514.1
Original member Current member NCBI NM_001889.4 NP_001880.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001889.4Link to Protein Sequence:NP_001880.2Re-query CCDS DB by Nucleotide ID:NM_001889Re-query CCDS DB by Protein ID:NP_001880Link to BLAST:NP_001880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123514.1 329 Q08257-1 329 100% 0 0
NP_001880.2 329 Q08257-1 329 100% 0 0

Chromosomal Locations for CCDS 665.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74706296 74706457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74706899 74706994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74707103 74707204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74710098 74710247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74714579 74714630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74719209 74719372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74723118 74723270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74724711 74724821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCGACTGGACAGAAGTTGATGAGAGCTGTTAGAGTTTTTGAATTTGGTGGGCCAGAAGTCCTGAAAT
TGCGATCAGATATTGCAGTACCGATTCCAAAAGACCATCAGGTTCTAATCAAGGTCCATGCATGTGGTGT
CAACCCCGTGGAGACATACATTCGCTCTGGTACTTATAGTAGAAAACCACTCTTACCCTATACTCCTGGC
TCAGATGTGGCTGGGGTGATAGAAGCTGTTGGAGATAATGCATCTGCTTTCAAGAAAGGTGACAGAGTTT
TCACTAGCAGCACGATCTCTGGGGGTTATGCAGAGTATGCTCTTGCAGCAGACCACACTGTTTACAAACT
ACCTGAAAAACTGGACTTTAAACAAGGAGCTGCCATCGGCATTCCATATTTTACTGCTTATCGAGCTCTG
ATCCACAGTGCCTGTGTGAAAGCTGGAGAGAGTGTTCTGGTTCATGGGGCAAGTGGAGGAGTTGGATTAG
CAGCATGCCAAATTGCTAGAGCTTATGGCTTAAAGATTTTGGGCACTGCTGGTACTGAGGAAGGACAAAA
GATTGTTTTGCAAAATGGAGCCCATGAAGTGTTCAATCACAGAGAAGTGAATTACATTGATAAAATTAAG
AAGTATGTTGGTGAGAAAGGAATTGATATAATTATTGAAATGTTAGCTAATGTAAATCTTAGTAAAGACT
TGAGTCTTCTGTCACATGGAGGACGAGTGATAGTTGTTGGCAGCAGAGGTACTATTGAAATAAACCCACG
AGACACCATGGCAAAGGAGTCGAGTATAATTGGAGTTACTCTCTTTTCCTCAACCAAGGAGGAATTTCAG
CAATATGCAGCAGCCCTTCAAGCTGGAATGGAAATTGGCTGGTTGAAACCTGTGATAGGTTCTCAATATC
CATTGGAGAAGGTGGCCGAGGCTCATGAAAATATCATTCATGGTAGTGGGGCTACTGGAAAAATGATTCT
TCTCTTATGA

Translation (329 aa):
MATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPG
SDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRAL
IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIK
KYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQ
QYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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