NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17899.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17899.2 Public Mus musculus 3 Dnai3 23 108 98 CCDS HistoryNCBI Gene:242253Re-query CCDS DB by CCDS ID:17899.2Re-query CCDS DB by GeneID:242253See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17899.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17899.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160285.1 ENSMUSP00000124475.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160285.1Link to Ensembl Protein Viewer:ENSMUSP00000124475.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160285Re-query CCDS DB by Protein ID:ENSMUSP00000124475
Original member Current member NCBI NM_172864.3 NP_766452.2 Accepted alive Link to Nucleotide Sequence:NM_172864.3Link to Protein Sequence:NP_766452.2Re-query CCDS DB by Nucleotide ID:NM_172864Re-query CCDS DB by Protein ID:NP_766452Link to BLAST:NP_766452.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766452.2 923 B2RY71 923 100% 0 0

Chromosomal Locations for CCDS 17899.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146040698 146040841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146042730 146042852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146044818 146044909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146046507 146046711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146048096 146048226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146054555 146054618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146055587 146055747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146062253 146062340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146063281 146063482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146065331 146065404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146066802 146066930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146068732 146068818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146070659 146070748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146080344 146080468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146081222 146081412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146082959 146083075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146092869 146093068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146094235 146094384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146095303 146095407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146097141 146097322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146102695 146102733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146103133 146103205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGGCACCCAAGCCACCGAAGAGCCCCAAGGGCCAGAAAAAGGGCAAAAAGAATATGAAGCAACAGTTAC
TTGTTCCTGAGGAAGAGGAGCCCATGAACATGGAGAGCATGGGCCATCCAGAAATTTATCCACTAGTATT
AACTACCAAGACCCAGGAAATATTCAACTGTCGAGTAGATGAAGATATGACAGACGAACAAACGTATAAG
CTTATCAAAAAGGAAGATATCTTGGCAGACTTGCAAAACCGAGCCGCAGTATCTGACTTCCACCCAGTCA
AAAAAATTGTCCGGGAGTACCCAGGGGAGGAACTTCTCCTCGTTTATGACAAAGACTTCAAGTATGGACT
TAACTTTTACCTCATTGGAACAGAGGACGGCAAGGAGAACTTTTTAAAGCCACCAGAAGTGCCAGAGGAA
CAAGAAGAGCCCAAGGAGCACGTCCAAGAAGACGTGTACGTCTACAATCCTCCCGTCTCCAAGCCATGGG
TGTCGCTGGGCAGCGAGAAAGAAATTGAGGAAGAATCTGTCCAGGAATCAGGAAAGCGGGTGACCTACAT
GATTTCTAGAAAACGGAGTGAATTTGGTGCACCAGTGACTTTCAGTGACCAGAATGCCTCTAGCGTAAAA
GATGCCTACATTGAGTGTACGTCTTACCCAGAGAAAAATTACACCCTCTCACAAGTTGAGAAAGATGTCG
GCTTGCAAGTCATTGCTGAAGTCAAGGACACAAGCACGCAGACAAAATGGGCTTTTCCTAAAAATGCTAC
CACTCAGTATTATCCAAGAGAATTCTCAGAAGAGGAAAAAAGCCTCATCGGAAAATCAAAATCTTTGGTC
GACTTTTTCAACAATGTGTCCACAAGCGTTGAAGTAGCCCTGCAGCAGAATGAGATCATGAACACGTTTA
TCGACGACTGGAAGAACCTCGCAGAGGAGGAGAGCACCTTTGGGGACAAGACTGACACCCATCTGAAGGA
GTACCAGTCCTTTACAGACCTTCACAACACCATGGAGAAAATGATTACCTGTGTCTCTTGGCACCCGACC
ATCTTCGGGCTCATAGTCGTGTCTGTGGCCGTGCGCCTCTCCTATGAAGAGAGAGTCCAGAATTCCGGCA
GACTGCTGCTGCAGCCGTCACTGCTCCTCTTCTGGAGCTTCTCCGACCCCATCCACCCTCAGTTGATGCT
GGAGAGCCCGGATGACATCTTCTGCTTCGAGTTCTGTCCAAGTGACCCCAATATCATCGCCGGAGGCTGC
ATTAACGGACAGATCGTCTTGTGGGATATCACGGCACACGCGGACCGCATAGAGAACATCAAGACGGGCG
GCCACAGAAGTAAAAAGACCTCTCTCAAGCCCATGTTTCTCCTTGAACCAGACAGCAATAAAGAATCGAT
GTACATCAGACACTGTGCAGTGTCTTCCATTGAAAATGGCCATAGGAAAGTAATCACGGATATACACTGG
CTGCCCGACTCATTCGAGATTAACAGGATGGGATCCGTCTTTGAGAACCGAAGTGGAATAAATTGTCAGC
TCGTCACATGCTCAGCAGACTGCACGATTTGTTTTTGGGATATCCGGCCCCAAAAACCTGCAGTCACAGC
TGCAGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAG
AAGAAAGAAGAAAACATTGACATTCCCTTTGATGTGCCCTCGACTTTCTTGCACCTAGATCTCTCCTGGA
AACCCCTGTCTAGATTAAAACTGTCTAAGGGTGATACAAGTTTAGACCACTGTCCAACCAAGCTGAGCCT
GGGCGAAGACCCTTTTCTTTGCAAAATACAAGGTACGTCGTCCATTCATATTATTCTGAGAGACAAGATG
TTAAGTCAGATCAAGATGGTGAAGACGTCAGAAATTAACCCCTACCAAAACCTGGAAGCAGGGATAGCCA
ATATCCTCAAGCCGATAGAGGACTTCTGCACGAAGTTCTTCGTGGGAACAGAGGAAGGTGAGGTGATATA
CACAGACTGGAAAATGGAGAGGGACTCTGACACCGGACGACTTATGGCCAAGAAACCTGTGAGCCTCTAC
ACCGTCCACGATGGGGCTGTCCACACCATCCAGAGGTCGCCTTTCTTCAATGACATCGTCCTCACTGTTG
GGGGATGGAATGTGGCTATCTGGAAGGAGGAGGTCATGACGGGACCGCTCCTTCAAACGTGCTGCGGACC
GAAAAGGTACACGGCAGGACACTGGTCCCTGACGAGGCCTGGAGTGTTCTACATCGGCCGAGAGGACGGA
AATGTCGATATCTGGGACCTCCTGGAGAAAACTCACGAGCCAGCCCAGTCCCAGAATATCTGCATCACCA
TGATCACCTACATCAAACCCTGGACCTTCTCCTCTAAGCAGCAGTTTATAGCCGTAGCTGACTATTACGG
AACACTGCACATCCTAGAAATCCCTTGGACCTTAAGTCACCCTTCCTTGAATGAGGTATCGAGTGTGAAC
TACTACTTTGAGAGAGAAGTCAGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAA
AGATAGATATGGCCCTGGAACTGGTGAAGAAGAAAGCGAAAATCTATCAAAAGACAAAAGAGCAAATGGA
GGCCGAGCTGAAGTTGGAATACGAGAGCTATCTGGATCTTGAGAAGTCTGTCCTCTTCGCCCTCGGCCTC
AGCAAAGTCTCAGAGAAGAAGTCCTACTTGGATTCACATTAG

Translation (923 aa):
MAPKPPKSPKGQKKGKKNMKQQLLVPEEEEPMNMESMGHPEIYPLVLTTKTQEIFNCRVDEDMTDEQTYK
LIKKEDILADLQNRAAVSDFHPVKKIVREYPGEELLLVYDKDFKYGLNFYLIGTEDGKENFLKPPEVPEE
QEEPKEHVQEDVYVYNPPVSKPWVSLGSEKEIEEESVQESGKRVTYMISRKRSEFGAPVTFSDQNASSVK
DAYIECTSYPEKNYTLSQVEKDVGLQVIAEVKDTSTQTKWAFPKNATTQYYPREFSEEEKSLIGKSKSLV
DFFNNVSTSVEVALQQNEIMNTFIDDWKNLAEEESTFGDKTDTHLKEYQSFTDLHNTMEKMITCVSWHPT
IFGLIVVSVAVRLSYEERVQNSGRLLLQPSLLLFWSFSDPIHPQLMLESPDDIFCFEFCPSDPNIIAGGC
INGQIVLWDITAHADRIENIKTGGHRSKKTSLKPMFLLEPDSNKESMYIRHCAVSSIENGHRKVITDIHW
LPDSFEINRMGSVFENRSGINCQLVTCSADCTICFWDIRPQKPAVTAAAAASAATTATNNANSQQSPVEK
KKEENIDIPFDVPSTFLHLDLSWKPLSRLKLSKGDTSLDHCPTKLSLGEDPFLCKIQGTSSIHIILRDKM
LSQIKMVKTSEINPYQNLEAGIANILKPIEDFCTKFFVGTEEGEVIYTDWKMERDSDTGRLMAKKPVSLY
TVHDGAVHTIQRSPFFNDIVLTVGGWNVAIWKEEVMTGPLLQTCCGPKRYTAGHWSLTRPGVFYIGREDG
NVDIWDLLEKTHEPAQSQNICITMITYIKPWTFSSKQQFIAVADYYGTLHILEIPWTLSHPSLNEVSSVN
YYFEREVRHLEYVQQRKEIREQEKIDMALELVKKKAKIYQKTKEQMEAELKLEYESYLDLEKSVLFALGL
SKVSEKKSYLDSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH