NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33493.1 Public Homo sapiens 20 FAM209A 24 110 108 CCDS HistoryNCBI Gene:200232Re-query CCDS DB by CCDS ID:33493.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371328.5 ENSP00000360379.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371328.5Link to Ensembl Protein Viewer:ENSP00000360379.4Re-query CCDS DB by Nucleotide ID:ENST00000371328Re-query CCDS DB by Protein ID:ENSP00000360379
Original member Current member NCBI NM_001012971.4 NP_001012989.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012971.4Link to Protein Sequence:NP_001012989.2Re-query CCDS DB by Nucleotide ID:NM_001012971Re-query CCDS DB by Protein ID:NP_001012989Link to BLAST:NP_001012989.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012989.2 171 Q5JX71 171 100% 0 0

Chromosomal Locations for CCDS 33493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 56524809 56525057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56525804 56526070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGTGGACGCTGAAATCGTCCCTGGTCCTGCTTCTGTGCCTCACCTGCAGCTATGCCTTTATGTTCTCTT
CTCTGAGACAGAAAACTAGCGAACCCCAGGGGAAGGTGCAATACGGAGAGCACTTTCGGATTCGGCAGAA
TCTACCAGAGCACACCCAAGGCTGGCTTGGGAGCAAATGGCTCTGGCTTCTTTTTGTTGTTGTGCCGTTT
GTGATACTGCAGTGTCAAAGAGACAGTGAGAAGAATAAGGAGCAGAGTCCTCCTGGCCTTCGAGGCGGCC
AACTTCACTCTCCATTAAAGAAAAAAAGAAATGCTTCCCCCAACAAAGACTGTGCATTCAATACCTTAAT
GGAACTCGAGGTGGAGCTTATGAAATTTGTGTCCAAAGTGCGGAATCTTAAACGTGCCATGGCAACAGGT
AGTGGCAGTAACCTCAGGCTTCGAAAGTCAGAGATGCCTGCAGATCCATACCATGTCACGATCTGTGAAA
TATGGGGAGAAGAAAGCTCTAGCTGA

Translation (171 aa):
MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGSKWLWLLFVVVPF
VILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKRAMATG
SGSNLRLRKSEMPADPYHVTICEIWGEESSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH