NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6024.1 Public Homo sapiens 8 REEP4 24 110 108 CCDS HistoryNCBI Gene:80346Re-query CCDS DB by CCDS ID:6024.1Re-query CCDS DB by GeneID:80346See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6024.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306306.8 ENSP00000303482.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306306.8Link to Ensembl Protein Viewer:ENSP00000303482.3Re-query CCDS DB by Nucleotide ID:ENST00000306306Re-query CCDS DB by Protein ID:ENSP00000303482
Original member Current member NCBI NM_025232.4 NP_079508.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025232.4Link to Protein Sequence:NP_079508.2Re-query CCDS DB by Nucleotide ID:NM_025232Re-query CCDS DB by Protein ID:NP_079508Link to BLAST:NP_079508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079508.2 257 Q9H6H4-1 257 100% 0 0

Chromosomal Locations for CCDS 6024.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22138487 22138552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22138639 22138793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22138926 22139061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22139416 22139529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22139963 22140083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22140172 22140248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22140625 22140697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22141451 22141482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTGTCCTGGATGATCTGTCGCCTGGTGGTGCTGGTGTTTGGGATGCTGTGTCCAGCTTATGCTTCCT
AT
AAGGCTGTGAAGACCAAGAACATTCGTGAATATGTGCGGTGGATGATGTACTGGATTGTTTTTGCACT
C
TTCATGGCAGCAGAGATCGTTACAGACATTTTTATCTCCTGGTTCCCTTTCTACTATGAGATCAAGATG
GCC
TTCGTGCTGTGGCTGCTCTCACCCTACACCAAGGGCGCCAGCCTGCTTTACCGCAAGTTTGTCCACC
CG
TCCCTGTCCCGCCATGAGAAGGAGATCGACGCGTACATCGTGCAGGCCAAGGAGCGCAGCTACGAGAC
C
GTGCTCAGCTTCGGGAAGCGGGGCCTCAACATTGCCGCCTCCGCTGCTGTGCAGGCTGCCACCAAGAGT
CAG
GGGGCGCTGGCCGGCAGGCTGCGGAGCTTCTCCATGCAGGACCTGCGCTCCATCTCTGACGCACCTG
CC
CCTGCCTACCATGACCCCCTCTACCTGGAGGACCAGGTGTCCCACCGGAGGCCACCCATTGGGTACCG
G
GCCGGGGGCCTGCAGGACAGCGACACCGAGGATGAGTGTTGGTCAGATACTGAGGCAGTCCCCCGGGCG
CCA
GCCCGGCCCCGAGAGAAGCCCCTAATCCGCAGCCAGAGCCTGCGTGTGGTCAAGAGGAAGCCACCGG
TG
CGGGAGGGCACCTCGCGCTCCCTGAAGGTTCGGACGAGGAAAAAGACTGTGCCCTCAGACGTGGACAG
C
TAG


Translation (257 aa):
MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPFYYEIKM
A
FVLWLLSPYTKGASLLYRKFVHPSLSRHEK
EIDAYIVQAKERSYETVLSFGKRGLNIAASAAVQAATKS
Q
GALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHRRPPI
GYRAGGLQDSDTEDECWSDTEAVPRA
P
ARPREKPLIRSQSLRVVKRKPPVRE
GTSRSLKVRTRKKTVPSDVDS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser