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Report for CCDS48126.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48126.2 Public Homo sapiens X XAGE1B 24 110 108 CCDS HistoryNCBI Gene:653067Re-query CCDS DB by CCDS ID:48126.2Re-query CCDS DB by GeneID:653067See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 48126.1
The coding region has been updated to shorten the N-terminus to one that is more supported by publication data. This transcript includes two transcription start sites, where the XAGE-1a variant is derived from the 5'-most start site, and the XAGE-1b variant is derived from the downstream start site. Experimental evidence in PMIDs 12479262 and 17335148 shows that both the XAGE-1a and XAGE-1b variants use the downstream translation initiation codon, as represented in this update.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48126.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375616.6 ENSP00000364766.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375616.6Link to Ensembl Protein Viewer:ENSP00000364766.1Re-query CCDS DB by Nucleotide ID:ENST00000375616Re-query CCDS DB by Protein ID:ENSP00000364766
Original member Current member EBI ENST00000518075.1 ENSP00000430130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518075.1Link to Ensembl Protein Viewer:ENSP00000430130.1Re-query CCDS DB by Nucleotide ID:ENST00000518075Re-query CCDS DB by Protein ID:ENSP00000430130
Original member Current member NCBI NM_001097604.3 NP_001091073.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001097604.3Link to Protein Sequence:NP_001091073.2Re-query CCDS DB by Nucleotide ID:NM_001097604Re-query CCDS DB by Protein ID:NP_001091073Link to BLAST:NP_001091073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091073.2 81 Q9HD64-2 81 100% 0 0

Chromosomal Locations for CCDS 48126.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52512165 52512187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52514778 52514904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52515432 52515527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGGAGAGCCCCAAAAAGAAGAACCAGCAGCTGAAAGTCGGGATCCTACACCTGGGCAGCAGACAGAAGA
AGATCAGGATACAGCTGAGATCCCAGTGCGCGACATGGAAGGTGATCTGCAAGAGCTGCATCAGTCAAAC
ACCGGGGATAAATCTGGATTTGGGTTCCGGCGTCAAGGTGAAGATAATACCTAAAGAGGAACACTGTAAA
ATGCCAGAAGCAGGTGAAGAGCAACCACAAGTTTAA

Translation (81 aa):
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCK
MPEAGEEQPQV


Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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