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Report for CCDS90263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90263.1 Public Mus musculus 7 Sh3gl3 23 108 98 CCDS HistoryNCBI Gene:20408Re-query CCDS DB by CCDS ID:90263.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032874.13 ENSMUSP00000032874.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032874.13Link to Ensembl Protein Viewer:ENSMUSP00000032874.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032874Re-query CCDS DB by Protein ID:ENSMUSP00000032874
Original member NCBI NM_017400.7 NP_059096.3 Updated not alive Link to Nucleotide Sequence:NM_017400.7Link to Protein Sequence:NP_059096.3Re-query CCDS DB by Nucleotide ID:NM_017400Re-query CCDS DB by Protein ID:NP_059096
Current member NCBI NM_017400.8 NP_059096.3 Accepted alive Link to Nucleotide Sequence:NM_017400.8Link to Protein Sequence:NP_059096.3Re-query CCDS DB by Nucleotide ID:NM_017400Re-query CCDS DB by Protein ID:NP_059096Link to BLAST:NP_059096.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059096.3 347 Q62421 347 99.7118% 0 1

Chromosomal Locations for CCDS 90263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 82174975 82175019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82260132 82260200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82268280 82268352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82270773 82270916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82273861 82273994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82276127 82276285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82284055 82284158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82285021 82285130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82306790 82306995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGTCGGTGGCTGGGCTCAAGAAGCAGTTCCACAAAGCCAGCCAGCTGTTTAGTGAAAAAATAAGTGGTG
CCGAAGGAACGAAGCTAGATGAAGAATTTCTGAACATGGAAAAGAAAATAGATATCACCAGTAAAGCTGT
TGCAGAAATCCTTTCAAAAGCCACAGAGTATCTCCAACCCAATCCAGCATACAGAGCTAAGCTAGGAATG
CTGAACACTGTGTCGAAGCTCCGAGGGCAGGTGAAGGCCACTGGCTACCCACAGACGGAAGGCTTGCTGG
GGGACTGCATGCTGAAGTATGGCAAGGAGCTCGGAGAAGACTCTGCTTTTGGCAACTCGTTGGTAGATGT
TGGTGAGGCCCTGAAACTCATGGCTGAGGTGAAAGACTCTCTGGATATTAATGTGAAGCAAACTTTTATT
GACCCACTGCAGCTACTGCAAGACAAAGATTTAAAGGAGATCGGGCACCACCTGAGAAAGCTGGAAGGCC
GTCGCCTGGATTATGATTATAAAAAGCGGCGGGTAGGTAAGATCCCCGAGGAAGAAATCAGACAAGCAGT
AGAGAAGTTTGAAGAGTCAAAGGAGTTGGCCGAAAGGAGCATGTTTAATTTTTTAGAAAATGATGTAGAG
CAAGTGAGCCAGCTGGCTGTGTTTGTAGAGGCGGCATTAGACTATCACAGGCAGTCCACAGAGATCCTCC
AGGAGCTGCAGAGCAAGCTGGAGTTGCGAATATCTCTTGCATCCAAAGTCCCCAAGCGAGAATTCATGCC
AAAGCCTGTGAACATGAGTTCCACCGATGCCAATGGGGTCGGACCCAGCTCTTCATCAAAGACACCAGGT
ACTGACACTCCCTCGGACCAGCCCTGCTGTCGTGGTCTCTATGACTTTGAGCCAGAAAATGAAGGAGAAT
TAGGATTTAAAGAAGGGGACATCATTACATTAACCAATCAGATAGATGAAAACTGGTATGAAGGGATGCT
TCGTGGGGAATCCGGCTTCTTCCCCATTAATTACGTGGAAGTCATTGTGCCTTTACCTCCGTAA

Translation (347 aa):
MSVAGLKKQFHKASQLFSEKISGAEGTKLDEEFLNMEKKIDITSKAVAEILSKATEYLQPNPAYRAKLGM
LNTVSKLRGQVKATGYPQTEGLLGDCMLKYGKELGEDSAFGNSLVDVGEALKLMAEVKDSLDINVKQTFI
DPLQLLQDKDLKEIGHHLRKLEGRRLDYDYKKRRVGKIPEEEIRQAVEKFEESKELAERSMFNFLENDVE
QVSQLAVFVEAALDYHRQSTEILQELQSKLELRISLASKVPKREFMPKPVNMSSTDANGVGPSSSSKTPG
TDTPSDQPCCRGLYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLRGESGFFPINYVEVIVPLPP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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