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Report for CCDS36091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36091.1 Public Mus musculus 10 Pmel 23 108 98 CCDS HistoryNCBI Gene:20431Re-query CCDS DB by CCDS ID:36091.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054125.8 ENSMUSP00000051869.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054125.8Link to Ensembl Protein Viewer:ENSMUSP00000051869.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054125Re-query CCDS DB by Protein ID:ENSMUSP00000051869
Original member NCBI NM_021882.4 NP_068682.2 Updated not alive Link to Nucleotide Sequence:NM_021882.4Link to Protein Sequence:NP_068682.2Re-query CCDS DB by Nucleotide ID:NM_021882Re-query CCDS DB by Protein ID:NP_068682
Current member NCBI NM_021882.5 NP_068682.2 Accepted alive Link to Nucleotide Sequence:NM_021882.5Link to Protein Sequence:NP_068682.2Re-query CCDS DB by Nucleotide ID:NM_021882Re-query CCDS DB by Protein ID:NP_068682Link to BLAST:NP_068682.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068682.2 626 Q60696 626 100% 0 0

Chromosomal Locations for CCDS 36091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128706286 128706358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128714045 128714155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128714282 128714428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128715221 128715355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128715527 128715688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128715927 128716550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128717751 128717867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128718058 128718142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128718598 128718803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128718900 128718987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128719885 128720017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGGTGTCCAGAGAAGGAGCTTCCTTCCCGTGCTTGTGCTGAGTGCTCTGCTGGCTGTGGGGGCCCTAG
AAGGATCCAGGAATCAGGACTGGCTTGGTGTCCCAAGACAACTTGTAACTAAAACCTGGAACAGGCAGCT
GTACCCCGAGTGGACAGAGGTGCAGGGGTCTAACTGCTGGAGAGGTGGCCAGGTATCTCTGAGGGTCATT
AATGATGGGCCTACACTGGTTGGTGCAAATGCCTCCTTTTCCATTGCCCTGCACTTCCCTGGAAGTCAAA
AGGTACTACCGGATGGTCAGGTTATCTGGGCCAACAACACCATCATCAATGGGAGCCAGGTGTGGGGAGG
ACAGCCAGTGTATCCACAGGAGCCTGATGATGCCTGTGTCTTCCCTGACGGTGGACCCTGCCCATCTGGT
CCTAAACCTCCGAAGAGAAGCTTTGTTTATGTTTGGAAGACCTGGGGAAAATACTGGCAAGTTCTGGGGG
GTCCAGTGTCCAGGCTGAGCATTGCTACGGGCCACGCAAAGCTGGGCACACACACAATGGAAGTGACTGT
CTACCACCGACGGGGTTCCCAGAGCTACGTGCCCCTTGCTCACGCCAGTTCAACCTTCACCATTACTGAC
CAGGTACCTTTCTCCGTGAGTGTGTCCCAGCTACAGGCCTTGGACGGAGAGACCAAGCACTTCCTGAGAA
ATCATCCTCTCATCTTTGCCCTTCAGCTCCACGACCCCAGTGGTTATTTGGCCGAGGCCGACCTCTCCTA
CACATGGGACTTTGGAGATGGTACTGGGACCCTGATCTCTCGGGCACTTGATGTCACTCACACTTACCTG
GAGTCGGGCTCAGTCACTGCCCAGGTGGTACTGCAGGCTGCCATTCCTCTTGTTTCCTGTGGTTCCTCCC
CAGTCCCGGGTACCACAGATGGCTACATGCCAACTGCAGAAGCACCTGGAACCACATCTAGGCAAGGAAC
CACTACAAAAGTTGTGGGTACTACACCTGGCCAGATGCCAACTACACAGCCCTCTGGAACCACAGTTGTA
CAAATGCCAACCACAGAGGTCACAGCTACTACATCTGAGCAGATGCTGACCTCAGCGGTCATAGATACCA
CACTGGCAGAGGTGTCAACTACAGAGGGTACAGGTACCACACCCACAAGGCCTTCTGGAACCACCGTTGC
ACAAGCAACAACCACAGAGGGTCCAGATGCCAGCCCATTGCTGCCCACACAAAGTTCTACAGGGTCCATT
AGCCCTCTACTGGATGACACCGACACCATAATGCTTGTGAAGAGACAAGTTCCCCTGGACTGTGTTCTAT
ATCGATATGGTTCTTTCTCCCTCGCCCTGGACATTGTCCAGGGTATTGAAAGTGCTGAGATCCTGCAGGC
TGTGCCATTCAGTGAAGGGGATGCATTTGAGCTGACTGTGTCCTGCCAAGGCGGGCTACCCAAGGAAGCC
TGTATGGACATTTCATCACCAGGGTGCCAGCCCCCTGCCCAGAGGCTGTGCCAGTCTGTTCCACCGAGCC
CAGACTGCCAGCTGGTTCTACACCAAGTGCTGAAAGGTGGCTCAGGGACATATTGCCTCAATGTGTCTTT
GGCTGACGCCAACAGCCTGGCAGTGGCCAGCACCCAACTTGTTGTTCCTGGTCAAGACGGTGGCCTTGGG
CAGGCTCCCTTGCTTGTAGGTATCTTGCTGGTGTTGGTGGCTGTGGTCCTTGCATCTCTGATACATAGGC
ATAGACTTAAGAAGCAGGGCTCAGTTTCCCAAATGCCACATGGTAGCACTCACTGGCTGCGCCTGCCTCC
GGTCTTCCGCGCCCGCGGCCTTGGAGAAAACAGCCCGCTCCTCAGTGGACAGCAGGTCTGA

Translation (626 aa):
MGVQRRSFLPVLVLSALLAVGALEGSRNQDWLGVPRQLVTKTWNRQLYPEWTEVQGSNCWRGGQVSLRVI
NDGPTLVGANASFSIALHFPGSQKVLPDGQVIWANNTIINGSQVWGGQPVYPQEPDDACVFPDGGPCPSG
PKPPKRSFVYVWKTWGKYWQVLGGPVSRLSIATGHAKLGTHTMEVTVYHRRGSQSYVPLAHASSTFTITD
QVPFSVSVSQLQALDGETKHFLRNHPLIFALQLHDPSGYLAEADLSYTWDFGDGTGTLISRALDVTHTYL
ESGSVTAQVVLQAAIPLVSCGSSPVPGTTDGYMPTAEAPGTTSRQGTTTKVVGTTPGQMPTTQPSGTTVV
QMPTTEVTATTSEQMLTSAVIDTTLAEVSTTEGTGTTPTRPSGTTVAQATTTEGPDASPLLPTQSSTGSI
SPLLDDTDTIMLVKRQVPLDCVLYRYGSFSLALDIVQGIESAEILQAVPFSEGDAFELTVSCQGGLPKEA
CMDISSPGCQPPAQRLCQSVPPSPDCQLVLHQVLKGGSGTYCLNVSLADANSLAVASTQLVVPGQDGGLG
QAPLLVGILLVLVAVVLASLIHRHRLKKQGSVSQMPHGSTHWLRLPPVFRARGLGENSPLLSGQQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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