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Report for CCDS35089.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35089.2 Public Homo sapiens 9 OR13C3 24 110 108 CCDS HistoryNCBI Gene:138803Re-query CCDS DB by CCDS ID:35089.2Re-query CCDS DB by GeneID:138803See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 35089.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641090.1 ENSP00000493076.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641090.1Link to Ensembl Protein Viewer:ENSP00000493076.1Re-query CCDS DB by Nucleotide ID:ENST00000641090Re-query CCDS DB by Protein ID:ENSP00000493076
Original member Current member NCBI NM_001001961.3 NP_001001961.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001961.3Link to Protein Sequence:NP_001001961.2Re-query CCDS DB by Nucleotide ID:NM_001001961Re-query CCDS DB by Protein ID:NP_001001961Link to BLAST:NP_001001961.2

Chromosomal Locations for CCDS 35089.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104535770 104536723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGGTGAGATTAACCAGACACTTGTGTCAGAATTTCTTCTTCTGGGTCTTTCTGGATACCCAAAGATTG
AGATTGTTTACTTTGCTCTCATTCTAGTTATGTACCTAGTGATTCTAATTGGCAATGGTGTTCTAATCAT
AGCCAGCATCTTTGATTCTCATTTTCACACACCAATGTACTTCTTCCTGGGCAACCTCTCTTTCCTGGAT
ATCTGCTATACATCCTCCTCTGTTCCCTCAACATTGGTGAGCTTAATCTCAAAGAAAAGAAACATTTCCT
TCTCTGGATGTGCAGTGCAGATGTTCTTTGGGTTTGCAATGGGGTCAACAGAATGTCTGCTTCTTGGCAT
GATGGCATTTGATCGTTATGTGGCCATCTGCAACCCACTGAGATACCCCATCATCCTGAGCAAGGTGGCG
TATGTATTGATGGCTTCTGTGTCCTGGCTGTCCGGTGGAATAAATTCAGCTGTGCAAACATTACTTGCCA
TGAGACTGCCTTTCTGTGGGAATAATATTATCAATCATTTCGCATGTGAAATATTAGCTGTCCTCAAGCT
GGCCTGTGCTGATATATCCCTCAATATTATCACCATGGTGATATCAAATATGGCCTTCCTGGTTCTTCCA
CTGATGGTCATTTTTTTCTCCTATATGTTCATCCTCTACACCATCTTGCAAATGAATTCAGCCACAGGAA
GACGCAAGGCATTTTCCACGTGCTCAGCTCACCTGACTGTGGTGATCATATTTTACGGTACCATCTTCTT
TATGTATGCGAAACCGAAGTCTCAAGACCTGATTGGGGAAGAAAAATTGCAAGCATTAGACAAGCTCATT
TCTCTGTTTTATGGGGTAGTGACACCCATGCTGAATCCTATACTCTATAGCTTGAGAAATAAGGATGTAA
AAGCTGCTGTAAAATATTTGCTGAACAAAAAACCAATTCACTAA

Translation (317 aa):
MGEINQTLVSEFLLLGLSGYPKIEIVYFALILVMYLVILIGNGVLIIASIFDSHFHTPMYFFLGNLSFLD
ICYTSSSVPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECLLLGMMAFDRYVAICNPLRYPIILSKVA
YVLMASVSWLSGGINSAVQTLLAMRLPFCGNNIINHFACEILAVLKLACADISLNIITMVISNMAFLVLP
LMVIFFSYMFILYTILQMNSATGRRKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDLIGEEKLQALDKLI
SLFYGVVTPMLNPILYSLRNKDVKAAVKYLLNKKPIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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