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Report for CCDS18569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18569.1 Public Mus musculus 4 Slc2a1 23 108 98 CCDS HistoryNCBI Gene:20525Re-query CCDS DB by CCDS ID:18569.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030398.9 ENSMUSP00000030398.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030398.9Link to Ensembl Protein Viewer:ENSMUSP00000030398.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030398Re-query CCDS DB by Protein ID:ENSMUSP00000030398
Original member NCBI NM_011400.3 NP_035530.2 Updated not alive Link to Nucleotide Sequence:NM_011400.3Link to Protein Sequence:NP_035530.2Re-query CCDS DB by Nucleotide ID:NM_011400Re-query CCDS DB by Protein ID:NP_035530
Current member NCBI NM_011400.4 NP_035530.2 Accepted alive Link to Nucleotide Sequence:NM_011400.4Link to Protein Sequence:NP_035530.2Re-query CCDS DB by Nucleotide ID:NM_011400Re-query CCDS DB by Protein ID:NP_035530Link to BLAST:NP_035530.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035530.2 492 P17809 492 100% 0 0

Chromosomal Locations for CCDS 18569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119108955 119108972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119120391 119120486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119132123 119132283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119132443 119132683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119133097 119133259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119133352 119133539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119133855 119133959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119134369 119134470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119135729 119135932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119136246 119136446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGATCCCAGCAGCAAGAAGGTGACGGGCCGCCTCATGTTGGCTGTGGGAGGAGCAGTGCTCGGATCAC
TGCAGTTCGGCTATAACACTGGTGTCATCAACGCCCCCCAGAAGGTTATTGAGGAGTTCTACAATCAAAC
ATGGAACCACCGCTACGGAGAGCCCATCCCATCCACCACACTCACCACGCTTTGGTCTCTCTCCGTGGCC
ATCTTCTCTGTCGGGGGCATGATTGGTTCCTTCTCTGTCGGCCTCTTTGTTAATCGCTTTGGCAGGCGGA
ACTCCATGCTGATGATGAACCTGTTGGCCTTTGTGGCTGCTGTGCTTATGGGCTTCTCCAAACTGGGCAA
GTCCTTTGAGATGCTGATCCTGGGCCGCTTCATCATCGGTGTGTACTGCGGCCTGACTACTGGCTTTGTG
CCCATGTATGTGGGAGAGGTGTCACCTACAGCTCTACGTGGAGCCCTAGGCACACTGCACCAGCTGGGAA
TCGTCGTTGGCATCCTTATTGCCCAGGTGTTTGGCTTAGACTCCATCATGGGCAATGCAGACTTGTGGCC
TCTGCTGCTCAGTGTCATCTTCATCCCAGCCCTGCTACAGTGTATCCTGTTGCCCTTCTGCCCCGAGAGC
CCCCGCTTCCTGCTCATCAATCGTAACGAGGAGAACCGGGCCAAGAGTGTGCTGAAGAAGCTTCGAGGGA
CAGCCGATGTGACCCGAGACCTGCAGGAGATGAAAGAAGAGGGTCGGCAGATGATGCGGGAGAAGAAGGT
CACCATCTTGGAGCTGTTCCGCTCACCCGCCTACCGCCAGCCCATCCTCATCGCTGTGGTGCTGCAGCTG
TCCCAGCAGCTGTCGGGTATCAATGCTGTGTTCTACTACTCAACGAGCATCTTCGAGAAGGCAGGTGTGC
AGCAGCCTGTGTACGCCACCATCGGCTCCGGTATCGTCAACACGGCCTTCACTGTGGTGTCGCTGTTTGT
TGTAGAGCGAGCTGGACGACGGACCCTGCACCTCATTGGCCTGGCTGGCATGGCAGGCTGTGCTGTGCTC
ATGACCATCGCCCTGGCCTTGCTGGAACGGCTGCCTTGGATGTCCTATCTGAGCATCGTGGCCATCTTTG
GCTTTGTGGCCTTCTTTGAAGTAGGCCCTGGTCCTATTCCATGGTTCATTGTGGCCGAGCTGTTCAGCCA
GGGGCCCCGTCCTGCTGCTATTGCTGTGGCTGGCTTCTCCAACTGGACCTCAAACTTCATTGTGGGCATG
TGCTTCCAGTATGTGGAGCAACTGTGCGGCCCCTACGTCTTCATCATCTTCACGGTGCTCCTCGTGCTCT
TCTTCATCTTCACCTACTTCAAAGTCCCTGAGACCAAAGGCCGAACCTTCGATGAGATCGCTTCCGGCTT
CCGGCAGGGGGGTGCCAGCCAAAGTGACAAGACACCCGAGGAGCTCTTCCACCCTCTGGGGGCGGACTCC
CAAGTGTGA

Translation (492 aa):
MDPSSKKVTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWNHRYGEPIPSTTLTTLWSLSVA
IFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVAAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFV
PMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNADLWPLLLSVIFIPALLQCILLPFCPES
PRFLLINRNEENRAKSVLKKLRGTADVTRDLQEMKEEGRQMMREKKVTILELFRSPAYRQPILIAVVLQL
SQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVL
MTIALALLERLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGM
CFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQGGASQSDKTPEELFHPLGADS
QV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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