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Report for CCDS25157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25157.1 Public Mus musculus 11 Slfn1 23 108 98 CCDS HistoryNCBI Gene:20555Re-query CCDS DB by CCDS ID:25157.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037994.7 ENSMUSP00000047782.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037994.7Link to Ensembl Protein Viewer:ENSMUSP00000047782.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037994Re-query CCDS DB by Protein ID:ENSMUSP00000047782
Original member Current member NCBI NM_011407.2 NP_035537.1 Accepted alive Link to Nucleotide Sequence:NM_011407.2Link to Protein Sequence:NP_035537.1Re-query CCDS DB by Nucleotide ID:NM_011407Re-query CCDS DB by Protein ID:NP_035537Link to BLAST:NP_035537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035537.1 337 Q9Z0I7 337 100% 0 0

Chromosomal Locations for CCDS 25157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83121060 83122073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGAACATCACCGATGAAGGGACCCCTGTGCTGATTCTAAATGCAGGAGGGATCACACTTGGGACAGAAA
GTAGGAAAACCATGGAGAATCATGACAGGGTAGAAGAGAACAGGAACATTACAAAAGCTCTGTGTGCTCT
GATTAATTCTGGAGAGGGAAAGGTCAAGGCTCACATTAAAAATCCAGACTACATTTTGTCTAAACATGGA
ATAGGAGAAGATTTGGAAACCTCTTTCAAGAACATTTTGCCATCTAGGCCCCTAGACTTTAAGCAATATC
AATCCTACTTTTTCATCTGTGTAGAAAAATCACAGAGTCCAGATGTCTCTGTTGGGAAGCCTGCCACCAT
TGCAACCAATTTGTACATGAGAAATGGGGCATCATCAGTTGAAATGAACTTGGATGCTGCTCAGAAGTTC
TTAGACAATATCAAGGTTGCAGGAGGAAGGTCGCCTTCAGCAAGGCCTTCAGATAGGCCAGGCGATGATA
CGCAAGAGGAAGGCCACATTCAGGAGTTGGCTGCTGCTTTTTTTAAACAGTCAAAACTTACAAAGAAGGA
AAATTTCTTATTTAGTGAATCCAAAAATGTTGAATATAAATCCTTTGAAACAAAAAAGTTGCTACAACGA
GTTAAAGAGATTCTCCCTCGAACTGTTTCTGCCTTTGCCAACACTGACGGGGGATATTTGTTTATTGGTT
TAGATGAAAAAAAACAGGAAATAGTTGGTTTTGAAGCAAAGAATTGCCAGCCTAAGTGCTTAGAGAGTGA
AATAGAAAAGTGCATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGAGGGAGAAGATCAAGTACAAG
TGCAAATTCATCGAAGTCCACGATTCCGGAGTTGTGTGTAAATATGTGTGTGCGCTCAGAGTGGAGAGGT
TCTGCTGCGCAGTGTTTGCTGCAGAGCCCGAGTCCTGGCACATGAAAGATGGTGGTGTTAAAAGGTTTAC
CATAGAGGAATGGATCAAGCTCCTCATGTCTTAG

Translation (337 aa):
MNITDEGTPVLILNAGGITLGTESRKTMENHDRVEENRNITKALCALINSGEGKVKAHIKNPDYILSKHG
IGEDLETSFKNILPSRPLDFKQYQSYFFICVEKSQSPDVSVGKPATIATNLYMRNGASSVEMNLDAAQKF
LDNIKVAGGRSPSARPSDRPGDDTQEEGHIQELAAAFFKQSKLTKKENFLFSESKNVEYKSFETKKLLQR
VKEILPRTVSAFANTDGGYLFIGLDEKKQEIVGFEAKNCQPKCLESEIEKCIQQLPVTHFCEEREKIKYK
CKFIEVHDSGVVCKYVCALRVERFCCAVFAAEPESWHMKDGGVKRFTIEEWIKLLMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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