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Report for CCDS55042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55042.1 Public Homo sapiens 6 C6orf163 24 110 108 CCDS HistoryNCBI Gene:206412Re-query CCDS DB by CCDS ID:55042.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388923.5 ENSP00000373575.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000388923.5Link to Ensembl Protein Viewer:ENSP00000373575.3Re-query CCDS DB by Nucleotide ID:ENST00000388923Re-query CCDS DB by Protein ID:ENSP00000373575
Original member Current member NCBI NM_001010868.3 NP_001010868.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010868.3Link to Protein Sequence:NP_001010868.2Re-query CCDS DB by Nucleotide ID:NM_001010868Re-query CCDS DB by Protein ID:NP_001010868Link to BLAST:NP_001010868.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010868.2 329 Q5TEZ5 329 100% 0 0

Chromosomal Locations for CCDS 55042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87345100 87345247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87348812 87348906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87350394 87350501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87356301 87356503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87364961 87365396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGATCAGAAATTCAGATTACAAAAACTTTGTTTGCTGTGCTGTTTGTAATAAAATAATTCCACCAGCCC
CTTTTGGAAAAACCTTCAAACGGATCCATGAATACAAGCCACTTAAGACACGCTTTTACACTCACAAAGA
CATACTAGATATTGGGGCAAATATTCTGAAAAAAGAAGAGCAGTTTCAAGAAGATATACTCAGAGAACAC
ATTGCGAAAGCAGAAGCTGAAGTATGGGCTCAGGCTAATGAACGTCAAAAACAAGCAGTGGAGAAAGCAC
TTGAAGAAGCAAATGACAGACACAAAATTGAAATTCAGATTTTGAAAGAGGAACATCAGAAAGATTTACA
GGAAGTGACAGCTAAAACTAAGACAGAGATGTATCAAAACATGGATGACGAAATGAAGAGAGAGCACTTG
GCTGCAGAACAGCGCATGGTCCACAGAATCCAAAGGATTATGATGGAATGCCACAGAGAGAAGGTCGAAG
CTGTGGAGAAAGCCAGGGCTGAAGAAAGACACATCGCCCAGGAAGCAATCCAGGCCCAGAAAAGCAAAGC
CGTGGAGGAAATTGTGAATACTGGTGTCACAGTTATTAAGGATGAGAAGACCAGTGTGGCCCGACTGATG
AGGGAAAAAGAACATGAAATGAGCATCCTCTATGGCATAGCTCAGAGGCAGAGGCAAGAAGAGGTACAGG
AAGTGCTTCAAGAAGCAGAGAAAACACATCAGGCCACTCTTGGCAATATGATGGATAAACTGGCTAACAC
CCAGGGGGAGCTGCTGTCTATAGCAAAACAACTGGGAATCATGACAAATTGGAAAGATTTCCTAGAGGAG
GAATTACAGGAAACCAGGATGGCATTTCAAAAATACATCAATTATACCTTTCCTAAGCTTTCACCAGGAC
ATGCAGATTTTATTCTGCCAGAAAGAAAGAAAACACCTTCTAATCTTGTTATTAAGGAGAACAAAACAAC
TCTTGATTAG

Translation (329 aa):
MIRNSDYKNFVCCAVCNKIIPPAPFGKTFKRIHEYKPLKTRFYTHKDILDIGANILKKEEQFQEDILREH
IAKAEAEVWAQANERQKQAVEKALEEANDRHKIEIQILKEEHQKDLQEVTAKTKTEMYQNMDDEMKREHL
AAEQRMVHRIQRIMMECHREKVEAVEKARAEERHIAQEAIQAQKSKAVEEIVNTGVTVIKDEKTSVARLM
REKEHEMSILYGIAQRQRQEEVQEVLQEAEKTHQATLGNMMDKLANTQGELLSIAKQLGIMTNWKDFLEE
ELQETRMAFQKYINYTFPKLSPGHADFILPERKKTPSNLVIKENKTTLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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