NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12179.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12179.2 Public Homo sapiens 19 SAXO5 24 110 108 CCDS HistoryNCBI Gene:374877Re-query CCDS DB by CCDS ID:12179.2Re-query CCDS DB by GeneID:374877See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12179.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12179.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361664.7 ENSP00000355241.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361664.7Link to Ensembl Protein Viewer:ENSP00000355241.2Re-query CCDS DB by Nucleotide ID:ENST00000361664Re-query CCDS DB by Protein ID:ENSP00000355241
Original member Current member NCBI NM_198534.3 NP_940936.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198534.3Link to Protein Sequence:NP_940936.2Re-query CCDS DB by Nucleotide ID:NM_198534Re-query CCDS DB by Protein ID:NP_940936Link to BLAST:NP_940936.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940936.2 505 Q8NA69 505 100% 0 0

Chromosomal Locations for CCDS 12179.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7500823 7501399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7504121 7504224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7504311 7504411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7505324 7505436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7505517 7505626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7505964 7506165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7507056 7507141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7508206 7508430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCCACAGGCGCCCTCCTGCCGTGCTCGCGCCCGTGCCCGATGTCCCGGCTGGACTTCCTCAAGGCCT
CGCACTTCTCGCTGGGGCCTGACCTGCGGCTGCACGAGGGCACCATGCGCACCACGTCGCACCGGGACTT
TGCCTACCCGGCTGCCACCCGGGAGCCGCCGAGCCTGCAGCCGCCGCCCGCGCTGCTTTTCCCAATGGAC
CCGCGCTGGGACCGGGAAGAGCGCGTGTCGGAGGCGCACCGCGCGTTCCCGCCGCCATCCACGCCGCCGT
GGGAGCTGCTGCAAGCGCAGGCGCGGGAACGCACGCTCGCCATGCAGGCCGGCAACCTGCACCTGCACGA
GGACGCGCACGCCGGGATCGGCCTCTCCAACGCGCACGCCGCCTACGGCTGGCCCGAGCTGCCGGCGCGC
ACCCGAGAGCGGATCCGCGGCGCGCGCCTCATCTTCGACCGCGACTCCCTGCCTCCTGGCGACCGCGACA
AGTTGCGCATCCCGCCCACCACGCACCAGGCGCTCTTTCCACCCCACGACGCGCGCCCGCAGCCTCGCGC
GCCCAGTTGCCACCTCGGGGGCCCCAACACCCTCAAGTGGGACTACACGAGACAAGATGGGACTTCCTAC
CAAAGACAGTTCCAGGCCCTGCCAGGCCCACCTGCCTTGAGGTGTAAGAGGGCCTCCTCCGGAGTGGAGC
TGGGAGACTGCAAGATCAGCTATGGATCAACGTGTTCGGAGCAGAAACAGGCCTACAGGCCCCAGGATCT
GCCTGAAGATAGGTATGACAAGGCCCAGGCCACAGCCCACATCCACTGTGTAAATATCCGTCCTGGTGAC
GGCCTCTTCCGCGACAGGACCACCAAGGCCGAGCACTTCTATGCCAGGGAGCCAGAGCCTTTTGTTCTTC
ACCACGATCAGACTCCGGAGTCGCACATCCTGAAAGGAAATTGGTGCCCCGGCCCCGGCAGTCTGGACAC
CTTCATGCAGTACTTCTACGGCCAGCCGCCACCCCCGACCCAGCCACCCAGCCGCCACGTGCCTCATGAG
AAATTGCAGAGTCATGTGACCCTAGGGGAGCCAAAGCTACTCAAACGCTTCTTCAAGACCACCATGGGCT
CGGACTACTGCCCTTCAGAGTGGAGACAGGTGCAGAAAGCGCCCAACCTCCACTTGCAGCAAAGCTACCT
GCCGCGGGGCACGGGCGAATTCGATTTTTTAACCATGAACCAGAAGATGCTGAAGCCACACAGAACACCT
CCGGCCCCGGTGACTGAAGAGATGCTACAGCGGTGCAAGTACAGCCACATGGAGCCCCCTCTGGGTGGAC
TGCGCTTCTTCTCAACACAATACAAGGACGAGTTTCCTTTCAAGTACCAGGGCCCAGCAGCCCTGAGACT
GAAAAATCCTCAGGAGGGCTTCGTGCCCCTGGGCACGCCTCACCAGCGCGGCTGCAGGGAGAAGATAGAC
CCTCTGGTCCCCCAGCCCCCTATGTACCTGTGCCCCAGCCAGCAATAA

Translation (505 aa):
MATGALLPCSRPCPMSRLDFLKASHFSLGPDLRLHEGTMRTTSHRDFAYPAATREPPSLQPPPALLFPMD
PRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPAR
TRERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHDARPQPRAPSCHLGGPNTLKWDYTRQDGTSY
QRQFQALPGPPALRCKRASSGVELGDCKISYGSTCSEQKQAYRPQDLPEDRYDKAQATAHIHCVNIRPGD
GLFRDRTTKAEHFYAREPEPFVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSRHVPHE
KLQSHVTLGEPKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQSYLPRGTGEFDFLTMNQKMLKPHRTP
PAPVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTPHQRGCREKID
PLVPQPPMYLCPSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH