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Report for CCDS47595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47595.1 Public Homo sapiens 7 ERV3-1 24 110 108 CCDS HistoryNCBI Gene:2086Re-query CCDS DB by CCDS ID:47595.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Endogenous retrovirus

Sequence IDs included in CCDS 47595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394323.3 ENSP00000391594.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394323.3Link to Ensembl Protein Viewer:ENSP00000391594.1Re-query CCDS DB by Nucleotide ID:ENST00000394323Re-query CCDS DB by Protein ID:ENSP00000391594
Original member Current member NCBI NM_001007253.4 NP_001007254.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007253.4Link to Protein Sequence:NP_001007254.2Re-query CCDS DB by Nucleotide ID:NM_001007253Re-query CCDS DB by Protein ID:NP_001007254Link to BLAST:NP_001007254.2
Original member Current member NCBI NM_001396062.1 NP_001382991.1 Accepted alive Link to Nucleotide Sequence:NM_001396062.1Link to Protein Sequence:NP_001382991.1Re-query CCDS DB by Nucleotide ID:NM_001396062Re-query CCDS DB by Protein ID:NP_001382991Link to BLAST:NP_001382991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007254.2 604 Q14264 604 100% 0 0
NP_001382991.1 604 Q14264 604 100% 0 0

Chromosomal Locations for CCDS 47595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 64991212 64993026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGCTGGGTATGAACATGCTACTCATCACTTTGTTCTTGCTACTCCCCTTATCCATGTTAAAAGGAGAAC
CCTGGGAGGGATGCCTCCACTGCACCCACACTACGTGGTCGGGGAACATCATGACTAAAACCCTGTTGTA
TCACACTTATTATGAGTGTGCTGGGACCTGCCTAGGAACTTGTACTCACAACCAGACAACCTACTCAGTC
TGTGACCCAGGAAGGGGCCAGCCTTATGTGTGTTATGACCCTAAGTCTTCACCTGGGACCTGGTTTGAAA
TTCATGTCGGGTCAAAGGAAGGGGATCTTCTAAACCAAACCAAGGTATTTCCCTCTGGCAAGGATGTCGT
ATCCTTATACTTTGATGTTTGCCAGATAGTATCCATGGGCTCACTCTTTCCCGTAATCTTCAGTTCCATG
GAGTACTATAGTAGCTGCCATAAAAATAGGTATGCACACCCTGCTTGTTCCACCGATTCCCCAGTAACAA
CTTGCTGGGACTGCACAACGTGGTCCACTAACCAACAATCACTAGGGCCAATTATGCTTACCAAAATACC
ATTAGAACCAGATTGTAAAACAAGCACTTGCAATTCTGTAAATCTTACCATCTTAGAGCCAGATCAGCCC
ATATGGACAACAGGTTTAAAAGCACCGCTAGGGGCACGAGTCAGCGGTGAAGAAATTGGCCCAGGAGCCT
ATGTCTATCTATATATCATAAAGAAAACTCGGACCCGCTCAACCCAACAGTTCCGAGTTTTTGAGTCATT
CTATGAGCATGTTAACCAGAAATTGCCTGAGCCCCCTCCCTTGGCCAGTAATTTATTCGCCCAACTGGCT
GAAAACATAGCCAGCAGCCTGCACGTTGCTTCATGTTATGTCTGTGGGGGAATGAACATGGGAGACCAAT
GGCCATGGGAAGCAAGGGAACTAATGCCCCAAGATAATTTCACACTAACCGCCTCTTCCCTCGAACCTGC
ACCATCAAGTCAGAGCATCTGGTTCTTAAAAACCTCCATTATTGGAAAATTCTGTATTGCTCGCTGGGGA
AAGGCCTTTACAGACCCAGTAGGAGAGTTAACTTGCCTAGGACAACAATATTACAACGAGACACTAGGAA
AGACTTTATGGAGGGGCAAAAGCAATAATTCTGAATCACCACACCCAAGCCCATTCTCTCGTTTCCCATC
TTTAAACCATTCTTGGTACCAACTTGAAGCTCCAAATACCTGGCAGGCACCCTCTGGCCTCTACTGGATC
TGTGGGCCACAAGCATATCGACAACTGCCAGCTAAATGGTCAGGGGCCTGTGTACTGGGGACAATTAGGC
CGTCCTTCTTCCTAATGCCCCTAAAACAGGGAGAAGCCTTAGGATACCCCATCTATGATGAAACTAAAAG
GAAAAGCAAAAGAGGCATAACTATAGGAGATTGGAAGGACAATGAATGGCCTCCTGAAAGAATAATTCAA
TATTATGGCCCAGCCACCTGGGCAGAAGATGGAATGTGGGGATACCGCACCCCAGTTTACATGCTTAACC
GCATTATAAGATTGCAGGCAGTACTAGAAATCATTACCAATGAAACTGCAGGGGCCTTGAATCTGCTTGC
CCAGCAAGCCACAAAAATGAGAAATGTCATTTATCAAAATAGACTGGCCTTAGACTACCTCCTAGCCCAG
GAAGAGGGAGTATGCGGAAAGTTCAACCTTACTAACTGCTGCCTGGAACTTGATGACGAAGGAAAGGTCA
TCAAAGAAATAACTGCTAAAATCCAAAAGTTAGCTCACATCCCAGTTCAGACTTGGAAAGGATAG

Translation (604 aa):
MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGTCTHNQTTYSV
CDPGRGQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLYFDVCQIVSMGSLFPVIFSSM
EYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGPIMLTKIPLEPDCKTSTCNSVNLTILEPDQP
IWTTGLKAPLGARVSGEEIGPGAYVYLYIIKKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLA
ENIASSLHVASCYVCGGMNMGDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWG
KAFTDPVGELTCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI
CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKDNEWPPERIIQ
YYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQATKMRNVIYQNRLALDYLLAQ
EEGVCGKFNLTNCCLELDDEGKVIKEITAKIQKLAHIPVQTWKG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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