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Report for CCDS55673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55673.1 Public Homo sapiens 1 ZBED6 24 110 108 CCDS HistoryNCBI Gene:100381270Re-query CCDS DB by CCDS ID:55673.1Re-query CCDS DB by GeneID:100381270See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 55673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000550078.3 ENSP00000447879.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000550078.3Link to Ensembl Protein Viewer:ENSP00000447879.1Re-query CCDS DB by Nucleotide ID:ENST00000550078Re-query CCDS DB by Protein ID:ENSP00000447879
Original member Current member NCBI NM_001174108.2 NP_001167579.1 Accepted alive Link to Nucleotide Sequence:NM_001174108.2Link to Protein Sequence:NP_001167579.1Re-query CCDS DB by Nucleotide ID:NM_001174108Re-query CCDS DB by Protein ID:NP_001167579Link to BLAST:NP_001167579.1
Original member Current member NCBI NM_001395895.1 NP_001382824.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395895.1Link to Protein Sequence:NP_001382824.1Re-query CCDS DB by Nucleotide ID:NM_001395895Re-query CCDS DB by Protein ID:NP_001382824Link to BLAST:NP_001382824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167579.1 979 P86452 979 100% 0 0
NP_001382824.1 979 P86452 979 100% 0 0

Chromosomal Locations for CCDS 55673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 203797523 203800462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2940 nt):
ATGAGTGTATGTACTCTAAGTGTACCAGTTTCTTCACTCTCTCCTGGCAGAAGATGCAACACTTTTAGTG
ATTCTGGGATTCTGGGATGTGTTCCTATTAATTCTAATACAGATGAAGAAGATGTGGTAGAGGAAAAGAT
GGTAGCAGAAGGAGTGAATAAAGAGGCAAAACAGCCTGCTAAAAAGAAAAGAAAGAAGGGTTTGCGAATT
AAGGGGAAAAGGCGTCGAAAAAAATTGATTCTTGCCAAAAAGTTTAGTAAGGATTTGGGATCTGGGAGGC
CTGTTGCAGATGCCCCTGCTTTGTTAGCTTCCAATGACCCTGAGCAGGATGAAGAAAGTCTTTTTGAGAG
CAATATAGAAAAACAGATCTATCTACCTAGTACTAGAGCCAAGACCTCCATTGTGTGGCACTTCTTTCAT
GTTGACCCCCAGTACACCTGGCGGGCCATTTGTAACCTCTGTGAGAAAAGCGTCAGCAGGGGTAAACCAG
GTAGCCATCTTGGTACATCTACTCTTCAACGACATCTGCAAGCAAGGCATTCACCTCATTGGACCAGGGC
CAACAAGTTTGGAGTTGCTAGTGGAGAGGAGGACTTTACCTTGGATGTGTCTTTATCTCCCTCTTCTGGA
AGCAATGGAAGCTTTGAATATATTCCTACTGATCCATTAGATGATAATAGAATGGGCAAGAAGCATGATA
AATCAGCATCTGATGCCCTAAGGGCAGAAAGAGGGAGATTTCTCATCAAAAGTAACATTGTCAAGCATGC
TTTAATTCCTGGAACTAGAGCCAAGACATCTGCCGTTTGGAATTTTTTTTACACTGATCCTCAGCACATC
TCAAGAGCTGTGTGTAATATATGTAAAAGAAGTGTGAGCCGGGGTAGGCCAGGGTCCCACTTAGGGACTT
CAACACTTCAACGACACCTGCAAGCCACACATCCTATCCATTGGGCTGTTGCCAACAAAGACAGTGGTGC
TGTTGCAAATGGATTAGATGAAGCTGAGACTGAGAGAAGTGATCTCTTGAGTGATACCTTGCATGGAGAA
AAGTCTACAGGCAGCCAAGATTTAACAGCTGAGGACCTTAGTGACTCTGATTCAGATGAACCTATGTTAG
AGGTTGAAAACAGATCTGAAAGTCCTATTCCCGTTGCAGAGCAAGGCACTCTGATGCGTGCGCAGGAGAG
AGAAACAACATGTTGTGGAAATCCAGTCTCAAGTCACATAAGTCAGGCAATTATCCAAATGATTGTGGAG
GATATGCATCCTTACAACTATTTCTCAACCCCAGCCTTTCAGAGGTTCATGCAGATTGTGGCCCCTGATT
ATAGGTTGCCATCAGAGACTTACTTTTTCACTAAGGCTGTACCTCAGTTATATGATTGTGTCAGAGAAAA
AATTTTCTTAACTTTAGAGAATGTTCAAAGCCAAAAGATACACCTGACTGTTGACATATGGACCCATGAC
CCATCCACTGACTATTTTATTGTGACTGTACACTGGGTTTCTTTGGAAACTGCGTCTTTTCTCAATAATG
GCAGGATCCCCGATTTTAGAAAGTGGGCAGTGCTTTGTGTTACAGGTTTGGCTAAAGACTGTTTGATAAC
CAATATTTTACAAGAATTAAATGACCAGATTGGTCTGTGGCTTTCTCCAAATTTCCTTATCCCTAGCTTC
ATTGTTTCTGACAATTCCTCTAATGTGGTACATGCAATCAAAGATGGTGGTTTTACCCATGTGCCATGCT
TCCTGCATTGTTTAAATATGGTCATTCAGGACTTTTTCTGCGAGCACAAAAGCATTGAGAATATGTTAGT
GGCTGCCAGGAAAACTTGTCATCATTTTAGTCATTCGGTCAAGGCCCGTCAGATACTGCAAGAGTTCCAA
AATGATCACCAACTTCCATGGAAGAATTTGAAGCAGGACGAAACTGGCCATTGGATTTCTACTTTTTATA
TGTTAAAATGGCTCTTGGAGCATTGCTACTCAGTTCACCATAGTCTTGGTAGAGCCAGTGGAGTTGTGCT
CACCTCCCTTCAGTGGACTCTAATGACTTATGTTTGTGATATTCTTAAGCCATTTGAGGAGGCTACCCAG
AAAGTGAGCGTGAAGACCGCAGGATTGAATCAGGTGCTACCCCTAATCCATCATCTACTCCTTTCCCTGC
AGAAACTCAGAGAAGATTTTCAAGTCAGAGGTATTACTCAGGCCCTCAATCTGGTGGATAGTTTATCTCT
GAAACTTGAAACAGATACCCTACTAAGTGCCATGCTTAAATCCAAGCCCTGTATCTTGGCTACTTTGTTA
GATCCTTGCTTTAAAAACAGTTTGGAAGACTTTTTTCCTCAAGGTGCTGATTTAGAAACTTATAAGCAGT
TCCTTGCAGAAGAGGTCTGTAATTATATGGAATCTTCACCAGAGATCTGCCAAATTCCAACTTCAGAAGC
TTCTTGTCCCTCAGTTACAGTGGGAGCTGATTCATTTACCTCATCTCTAAAAGAAGGCACCTCCAGTTCA
GGTTCTGTTGATAGCTCAGCTGTAGACAATGTTGCCCTTGGAAGCAAAAGCTTCATGTTCCCTTCTGCTG
TAGCAGTTGTGGATGAGTACTTCAAAGAGAAGTATTCAGAGTTCTCAGGAGGTGATGACCCTTTAATTTA
CTGGCAGAGGAAGATAAGCATATGGCCGGCTTTGACCCAGGTTGCCATCCAGTATCTAAGTTGCCCCATG
TGTAGTTGGCAATCTGAATGTATCTTTACTAAAAATAGCCACTTTCATCCAAAACAGATCATGAGCCTGG
ACTTTGACAATATAGAACAACTGATGTTTCTGAAAATGAACTTGAAAAATGTTAACTACGATTATTCTAC
GTTGGTTCTGAGCTGGGATCCTGAGCAGAATGAAGTTGTTCAAAGCAGTGAAAAAGAAATACTGCCTTAA

Translation (979 aa):
MSVCTLSVPVSSLSPGRRCNTFSDSGILGCVPINSNTDEEDVVEEKMVAEGVNKEAKQPAKKKRKKGLRI
KGKRRRKKLILAKKFSKDLGSGRPVADAPALLASNDPEQDEESLFESNIEKQIYLPSTRAKTSIVWHFFH
VDPQYTWRAICNLCEKSVSRGKPGSHLGTSTLQRHLQARHSPHWTRANKFGVASGEEDFTLDVSLSPSSG
SNGSFEYIPTDPLDDNRMGKKHDKSASDALRAERGRFLIKSNIVKHALIPGTRAKTSAVWNFFYTDPQHI
SRAVCNICKRSVSRGRPGSHLGTSTLQRHLQATHPIHWAVANKDSGAVANGLDEAETERSDLLSDTLHGE
KSTGSQDLTAEDLSDSDSDEPMLEVENRSESPIPVAEQGTLMRAQERETTCCGNPVSSHISQAIIQMIVE
DMHPYNYFSTPAFQRFMQIVAPDYRLPSETYFFTKAVPQLYDCVREKIFLTLENVQSQKIHLTVDIWTHD
PSTDYFIVTVHWVSLETASFLNNGRIPDFRKWAVLCVTGLAKDCLITNILQELNDQIGLWLSPNFLIPSF
IVSDNSSNVVHAIKDGGFTHVPCFLHCLNMVIQDFFCEHKSIENMLVAARKTCHHFSHSVKARQILQEFQ
NDHQLPWKNLKQDETGHWISTFYMLKWLLEHCYSVHHSLGRASGVVLTSLQWTLMTYVCDILKPFEEATQ
KVSVKTAGLNQVLPLIHHLLLSLQKLREDFQVRGITQALNLVDSLSLKLETDTLLSAMLKSKPCILATLL
DPCFKNSLEDFFPQGADLETYKQFLAEEVCNYMESSPEICQIPTSEASCPSVTVGADSFTSSLKEGTSSS
GSVDSSAVDNVALGSKSFMFPSAVAVVDEYFKEKYSEFSGGDDPLIYWQRKISIWPALTQVAIQYLSCPM
CSWQSECIFTKNSHFHPKQIMSLDFDNIEQLMFLKMNLKNVNYDYSTLVLSWDPEQNEVVQSSEKEILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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