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Report for CCDS51712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51712.1 Public Mus musculus 6 Samd9l 23 108 98 CCDS HistoryNCBI Gene:209086Re-query CCDS DB by CCDS ID:51712.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120087.5 ENSMUSP00000112688.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120087.5Link to Ensembl Protein Viewer:ENSMUSP00000112688.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120087Re-query CCDS DB by Protein ID:ENSMUSP00000112688
Original member NCBI NM_010156.3 NP_034286.2 Updated not alive Link to Nucleotide Sequence:NM_010156.3Link to Protein Sequence:NP_034286.2Re-query CCDS DB by Nucleotide ID:NM_010156Re-query CCDS DB by Protein ID:NP_034286
Current member NCBI NM_010156.4 NP_034286.2 Accepted alive Link to Nucleotide Sequence:NM_010156.4Link to Protein Sequence:NP_034286.2Re-query CCDS DB by Nucleotide ID:NM_010156Re-query CCDS DB by Protein ID:NP_034286Link to BLAST:NP_034286.2

Chromosomal Locations for CCDS 51712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3372520 3377259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4740 nt):
ATGAGTGGACAAGTAACTCAACCAAAATTGATCAAAGACTGGACCAAAGAACATGTAAGAAAATGGGTTA
CTGAAGATCTTAACATTGTTGAGAAATATGCTCAAATCTTGTTCAAAGAAGAGGTAACAGGGATGGTCCT
GCAGGAATTAACTGAAGAGGATCTTAGAGAAATGGGCTTGCCACGGGGTCCAGCACTTCTGATAAAACGC
ATGTATAACAAACTAATTAGTTCCCCTGAAAGTCACAATCAAGATTCCAGAGAATTAAATGATAAAAAAC
TCTCAACAAAAGAACAGCAAACAAAGACCAAAAATGAGGAAGAAAACTCAGTTTCATCCAACAGTGATCA
TGGTCTCAGGGAGACAGGGCAGAATGAAGAACAAGAACCAAGTCTTACGAAAGAAAACATGTTAGGTGAT
GTGGTGACTAAAGACATGGAAGATAATAAGCCCAAACCAGAACAGATGTCTTGCACGCCATACCCTTTTG
ATTCTTTTTGTGATGTCAAACAATACATAGAACATTCTATTCTACGTGTTGCTGAGACAGGGCCACTCAA
TCTCATTGACCCAATACATGAATTCAAAGCCTTTACAAACACAAAGAAAGCCACAGAAGAGGACATAAAA
ATGAAATTTAGCAATGAGACTTTCCGATTTGCAGCAGCTTGTATGAATTCACGTACCAATGGCACTATTC
ATTTTGGAGTAAAAGACAAACCACACGGGGAAATTGTTGGTGTGCAAGTCACCAGTAAAGATATCTTTGT
TAACCATTTCAACACAATGATCACGAAGTATTTTGAAGACAGTGAAATCAGTGAAGCCAGGGCTTGTATC
CGGGAACCACGGTTCGTGGAAGTCCTTTTGCAGAATAATACACAATCTAATAGATTTGTCATTGAGGTAG
ATGTTATTCCCAGACATTCTATATGTCAAGAAAAGTATTTCTACATTATGATGCAAAGTAGCACAGGCAA
AACATGGAAACAAAGCAAAGATACTTCATTGTTTGTAAGAGAAGGAGCTAGCTCTAAGAATATCCTGGGC
AATCCCAACCAACGGGATAGAGAGTTCAAGAAATTTCTAGAGGATTTAAAGATGTGGACAGCGTCTAGAA
AAGCGGCCGAAGAAGAACTTAGAATGGTAACTAAGAAAGAGAGTGAAGGACTAAAACTGTCTAAACTTTT
GACCAGACACCAAGGCTCACTTGATGAATCTTACTATGATTGGTACATTCTTGTAACAAATACCTGTGCA
CCAACTCAATTAGAGCACTTAGAGTTCATAAAGGAAATGAAATTGTTTGCTGTGCTAGATTTTGATCCTT
ATTCTCACATCAAGGGAGTGGTCAAAGCTTACAGAGAAAGCAGAATAGCAAACCTTCACCTGCCCAGTCA
CTATGAGGAAAAAACTACCATAGCAGAGAAAATTTCTACTCTGAAACTTTATGAGCAACCTAGCTGGATC
TTCTGCAATGGCAGAGTAGACTTGTCATGTCAACCTCTAGAGCCACATTTATGGCAGAGAGATAGAGCTT
CTGGGGTTAGAAGACTTATTTCATTCCTCACAGACGAAAATATCATAGTAAAAGGGAAGGTTTTGGTGGT
GTTCCTCTTACTTTCTCCCATAGAAAACCAAAAAGATCCACTCATTGAGACTTTTTGTGCTTTCTATCAA
GTTTTCAATGGAATGGACAATATGTTGTGTATCTGTGTCAACTCAGCTATCTACCAACAATGGAGTGATC
TACTACAAGTAAGACTGGAAATCAAAGATGATCTGGCAAAACATAGCATTTCCACTTTAAACATAGAACT
AGTCAACAATACCATCCTCAAACTGAAATCAGTGATTCAATCTTCAAGGAGATTTTTGCCCTCCTGTGGC
TCCTCCTCTGTTATTCTGGAGAAAATGGATGAAGATATCATGAGTGCATTGGAAATCCTCTGTGAAAATG
AGTGTAAAGACACAGACATAGAGAAAGATGAATCTCAATTCCTAGAATTTAAGAAATCAAGAGAAGAACA
CTTTTATCGAGGAGGCAGAGTATCCTGGTGGAATTTCTATTTTTCTTCTGAAAACTATTCTTCAGCTTTT
GTAAAAAGGGATAGTTTTGAAGAGCTAACAACATTAATACAACAGTGTGCAGACTCTCCTAAACCAGTGT
TTGTCAAAGTCATCAACCTGTACCATCACCCAGGCTGTGGAGGTACTACGTTGGCGATGCATGTTCTCTG
GGACTTAAAGCAGAAGTTTCGGTGTGCTGTCTTGAAAAACAAAGCAACTGATTTTGTAGAGATTGGAGAA
CAAGTAAGCAAGCTAATGAGCTACAAGGCTACCAGCCACGAGGACTTCATTCCCGTTCTTCTCCTTGTGG
ATGATTTCGAAGAACAAGAGAACGCCTATATTCTGCAGAATGCCATCAATGCCTTTATAGCAGAAAAGGG
TCTGAGATATGAAAAAACATTAGTCATAATCCTGAACTGCATGAGATCTCAGAATCCAGATGAAAGTGCA
AAGTTAGCAAATAGCATTTCACTAAAATACCAACTTTCTCCAAAAGAACAAAGAGCCTTTGAGGCCAAAC
TACAGGAAATTGAAAAGGAGCATAAGAACTGTGAAAACTTTTATTCGTTCATGATCTTGAAAGGCAACTT
TGATACAACTTACATAAAGAATGTAGTGAAGAATACTCTGAAGGACCTGGATGCTAAAAGCAGGAGGGCC
CAGCTCATTTCTTACCTGGCATTACTCAACTCTTATGTTACAGATTCTACCATTTCAGTATCACAGTGTG
AAATATTTTTGGGAATCACTTACACCAAGAAATATGGGAAACCTGAAACTGTAGAAAAGAACATGGGAAC
CTATTCCACACTTCTAATAAGAACTGAAGTTTCAGATTATGGGAGGTACACTGGTATACGTATCATTCAC
CCTCTAATTGCCACCCACTGTTTAAAAGAACTGGAAATGAGCTACAGAATGGATAAGTGTCAGATTGCAC
TAAATATGCTAGAAGAGAATGTATTGTATGATTCTGGTCTAGGAAGGGACAAATTTAAATATGATGTGCA
AACTCTATTGCTTACAAGACAACGCAAGGAACATGGAGCTGAAACAGACACTCTCTTTTCCCCATTGATT
GAAGAATTGCAGAATGAGGAAACTGAAAAGGTCTTGATCGCAGGAAGTGATCGATTCCCACAAAATGCAT
TCATTTGTCAAGCTTTAGCAAGACACTTCTATATTAAAGAGAAGAACTTTAGCACTGCTTTAGTCTGGGC
AAATCTGGCCAAAAGGAAAGCACCTAAGAATTCTTATATTTCAGATACACTTGGTCAAGTTTACAAAAGT
GAGCTCAAACAGTGGTTGGGTAAAAATAAGACATGTGGAAATATTAGTGTGGATGATCTGGCCTATTTCC
TAGAAGTTGCTGAAAAGGCTTCAAAAGCCTTCAAAGAGTCTCAGAATCAATCTGATAGTAAGGACTATGG
AACTGAGGCATGGTCACCACAGAATTCCCAAAGAAGATATGACACTTTCAACACAGCCGGCTTCTTCGGA
GAAATAGAAGTAGGTCTTGACACTATCCAGCTTCTTCAGCTCACACCCCTTTTCCATAAAGAAAATGAAA
TATCAAAAGAATCTATGGCAGAGTTTTTATCTGGAAAGGGGACCATCCTTTCAGACCCAAAAGGTGAATA
TTGTGTTGTTCTCAGCAAATTTACATCCCTTCTACAGAATTTACATTCAGATTTGGAAAGATGTTTTCAT
TTTTTTGGTGATTATATGGGTTTTCTGAAACCAAGGAATACTCCAAAAGAATTGACAGAACTCTTACTAA
GTAAGAAAGTCAGCCGCTGTTTCAAGAAATATGTAGAACTTTTCTGCCATTTAGATACCAACTTGGTACA
GGGCAAAGAAGATCTGTTACTTCAAAAGGAGAACTGTAGGAAGCGCATACAAGCTTGGCGAGCAGATACA
TTTTCAGGACTCCTTGAATATCTTAATCCAAATCACAAAGAAGCTAACAACATAGAAAATATAGTGGGAA
ACTATACCTTCCTATTACAGGATATCCTAAACAAGCAACTGTCAAAGGTGCTGACCAAGGACATACAAAA
TTTCATTTTGGCCAACATTATTCTCAGTTGTCTAAAGCCCAGTTCCAAGTATATCTTGCCATTTAGCACA
CTGAAAAAAAAGCTCAGAGAGGTCCTGCAGATTGTGGGGCTAACTCATTCATATCCTGATCCTTATTTCT
TGGCCTGCCTCCTATTCTGGCCAGAAAACAAAGAGCTAGATGAAGACTCCACACTAATAGAAAAGTATGT
CTCATCCTTGAATCGATCCTTCAGGAGACAGTACAAGCACATGTGTAGGTCCAGGCAGCCAAGCACACTC
TTCTACCTGGGGCAGAAGAAGGGTCTTAACAGTCTTGTTCATAAGGCTGAAATCGAGCGCTACTTCAGTG
AAGTGCAAGATTCAAATTCCTTCTGGCACAGTGGAGTAGTGTGGGAAAAAAGAGAGGTCAAAGACCTCCT
ACGCCTGCTGGATGGCCAGGCTGAAGGCAAACTAATCTCACTAGAATATGGAACAGAGGCAAAAATAAAA
ATACCAGTGACTTCTGTGTATTCAGCTCCACTCAGAAGTGGAAGGAACATAGAGAGAGTGTCCTTCTACC
TAGGATTTTCCATTGAGGGTCCTCTGGCATATGGCATAAAAGTGATCTAA

Translation (1579 aa):
MSGQVTQPKLIKDWTKEHVRKWVTEDLNIVEKYAQILFKEEVTGMVLQELTEEDLREMGLPRGPALLIKR
MYNKLISSPESHNQDSRELNDKKLSTKEQQTKTKNEEENSVSSNSDHGLRETGQNEEQEPSLTKENMLGD
VVTKDMEDNKPKPEQMSCTPYPFDSFCDVKQYIEHSILRVAETGPLNLIDPIHEFKAFTNTKKATEEDIK
MKFSNETFRFAAACMNSRTNGTIHFGVKDKPHGEIVGVQVTSKDIFVNHFNTMITKYFEDSEISEARACI
REPRFVEVLLQNNTQSNRFVIEVDVIPRHSICQEKYFYIMMQSSTGKTWKQSKDTSLFVREGASSKNILG
NPNQRDREFKKFLEDLKMWTASRKAAEEELRMVTKKESEGLKLSKLLTRHQGSLDESYYDWYILVTNTCA
PTQLEHLEFIKEMKLFAVLDFDPYSHIKGVVKAYRESRIANLHLPSHYEEKTTIAEKISTLKLYEQPSWI
FCNGRVDLSCQPLEPHLWQRDRASGVRRLISFLTDENIIVKGKVLVVFLLLSPIENQKDPLIETFCAFYQ
VFNGMDNMLCICVNSAIYQQWSDLLQVRLEIKDDLAKHSISTLNIELVNNTILKLKSVIQSSRRFLPSCG
SSSVILEKMDEDIMSALEILCENECKDTDIEKDESQFLEFKKSREEHFYRGGRVSWWNFYFSSENYSSAF
VKRDSFEELTTLIQQCADSPKPVFVKVINLYHHPGCGGTTLAMHVLWDLKQKFRCAVLKNKATDFVEIGE
QVSKLMSYKATSHEDFIPVLLLVDDFEEQENAYILQNAINAFIAEKGLRYEKTLVIILNCMRSQNPDESA
KLANSISLKYQLSPKEQRAFEAKLQEIEKEHKNCENFYSFMILKGNFDTTYIKNVVKNTLKDLDAKSRRA
QLISYLALLNSYVTDSTISVSQCEIFLGITYTKKYGKPETVEKNMGTYSTLLIRTEVSDYGRYTGIRIIH
PLIATHCLKELEMSYRMDKCQIALNMLEENVLYDSGLGRDKFKYDVQTLLLTRQRKEHGAETDTLFSPLI
EELQNEETEKVLIAGSDRFPQNAFICQALARHFYIKEKNFSTALVWANLAKRKAPKNSYISDTLGQVYKS
ELKQWLGKNKTCGNISVDDLAYFLEVAEKASKAFKESQNQSDSKDYGTEAWSPQNSQRRYDTFNTAGFFG
EIEVGLDTIQLLQLTPLFHKENEISKESMAEFLSGKGTILSDPKGEYCVVLSKFTSLLQNLHSDLERCFH
FFGDYMGFLKPRNTPKELTELLLSKKVSRCFKKYVELFCHLDTNLVQGKEDLLLQKENCRKRIQAWRADT
FSGLLEYLNPNHKEANNIENIVGNYTFLLQDILNKQLSKVLTKDIQNFILANIILSCLKPSSKYILPFST
LKKKLREVLQIVGLTHSYPDPYFLACLLFWPENKELDEDSTLIEKYVSSLNRSFRRQYKHMCRSRQPSTL
FYLGQKKGLNSLVHKAEIERYFSEVQDSNSFWHSGVVWEKREVKDLLRLLDGQAEGKLISLEYGTEAKIK
IPVTSVYSAPLRSGRNIERVSFYLGFSIEGPLAYGIKVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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