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Report for CCDS35503.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35503.2 Public Homo sapiens X PNCK 24 110 108 CCDS HistoryNCBI Gene:139728Re-query CCDS DB by CCDS ID:35503.2Re-query CCDS DB by GeneID:139728See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 35503.1
The coding region has been updated to extend the N-terminus based on the 5' splice pattern of AK296203.1, and on conservation support from other primate species. Alternative 5' end variants exist that would produce isoforms with shorter N-termini, with homology support from rat NP_058971.1 and mouse NP_036170.1, but currently these do not have full-length transcript support in human.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35503.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447676.6 ENSP00000405950.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447676.6Link to Ensembl Protein Viewer:ENSP00000405950.2Re-query CCDS DB by Nucleotide ID:ENST00000447676Re-query CCDS DB by Protein ID:ENSP00000405950
Original member Current member NCBI NM_001039582.3 NP_001034671.3 Accepted alive Link to Nucleotide Sequence:NM_001039582.3Link to Protein Sequence:NP_001034671.3Re-query CCDS DB by Nucleotide ID:NM_001039582Re-query CCDS DB by Protein ID:NP_001034671Link to BLAST:NP_001034671.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034671.3 426 Q6P2M8-5 426 100% 0 0

Chromosomal Locations for CCDS 35503.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153670457 153670594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153670744 153670831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153670918 153670996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153671078 153671190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153671285 153671360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153671549 153671672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153671880 153672018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153672126 153672200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153672566 153672697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153673009 153673078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153673929 153674175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGAGGCTGCTTTCGGGCAAGTGGCCGGGTCAGCCTGTCCTCGGAGAGGCGGTGAAGGCAGAGACTGGA
AGGCAGAGAGCCTTGCCGACCTGTGGCCGAAGAGCTCTCCGGGAGACAGCCACCGGTGGTGCAAAGGCCC
TGGGGCCGGCCCAGCCGGGCCGCAGCTCCGGGAGGCGGCGCGAGCGAGCAGTGGGCTGGGCGGTGGCGGC
CGGCACCCGAGCCGGATCCCGGCGATTGCCTTACAAGACATGCTGCTGCTGAAGAAACACACGGAGGACA
TCAGCAGCGTCTACGAGATCCGCGAGAGGCTCGGCTCGGGTGCCTTCTCCGAGGTGGTGCTGGCCCAGGA
GCGGGGCTCCGCACACCTCGTGGCCCTCAAGTGCATCCCCAAGAAGGCCCTCCGGGGCAAGGAGGCCCTG
GTGGAGAACGAGATCGCAGTGCTCCGTAGGATCAGTCACCCCAACATCGTCGCTCTGGAGGATGTCCACG
AGAGCCCTTCCCACCTCTACCTGGCCATGGAACTGGTGACGGGTGGCGAGCTGTTTGACCGCATCATGGA
GCGCGGCTCCTACACAGAGAAGGATGCCAGCCATCTGGTGGGTCAGGTCCTTGGCGCCGTCTCCTACCTG
CACAGCCTGGGGATCGTGCACCGGGACCTCAAGCCCGAAAACCTCCTGTATGCCACGCCCTTTGAGGACT
CGAAGATCATGGTCTCTGACTTTGGACTCTCCAAAATCCAGGCTGGGAACATGCTAGGCACCGCCTGTGG
GACCCCTGGATATGTGGCCCCAGAGCTCTTGGAGCAGAAACCCTACGGGAAGGCCGTAGATGTGTGGGCC
CTGGGCGTCATCTCCTACATCCTGCTGTGTGGGTACCCCCCCTTCTACGACGAGAGCGACCCTGAGCTCT
TCAGCCAGATCCTGAGGGCCAGCTATGAGTTTGACTCTCCTTTCTGGGATGACATCTCAGAATCAGCCAA
AGACTTCATCCGGCACCTTCTGGAGCGAGACCCCCAGAAGAGGTTCACCTGCCAACAGGCCTTGCGGCAC
CTTTGGATCTCTGGGGACACAGCCTTCGACAGGGACATCTTAGGCTCTGTCAGTGAGCAGATCCGGAAGA
ACTTTGCTCGGACACACTGGAAGCGAGCCTTCAATGCCACCTCGTTCCTGCGCCACATCCGGAAGCTGGG
GCAGATCCCAGAGGGCGAGGGGGCCTCTGAGCAGGGCATGGCCCGCCACAGCCACTCAGGCCTCCGTGCT
GGCCAGCCCCCCAAGTGGTGA

Translation (426 aa):
MEAAFGQVAGSACPRRGGEGRDWKAESLADLWPKSSPGDSHRWCKGPGAGPAGPQLREAARASSGLGGGG
RHPSRIPAIALQDMLLLKKHTEDISSVYEIRERLGSGAFSEVVLAQERGSAHLVALKCIPKKALRGKEAL
VENEIAVLRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAVSYL
HSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQAGNMLGTACGTPGYVAPELLEQKPYGKAVDVWA
LGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESAKDFIRHLLERDPQKRFTCQQALRH
LWISGDTAFDRDILGSVSEQIRKNFARTHWKRAFNATSFLRHIRKLGQIPEGEGASEQGMARHSHSGLRA
GQPPKW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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