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Report for CCDS21114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21114.1 Public Mus musculus 7 Cd22 23 108 98 CCDS HistoryNCBI Gene:12483Re-query CCDS DB by CCDS ID:21114.1Re-query CCDS DB by GeneID:12483See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019248.12 ENSMUSP00000019248.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019248.12Link to Ensembl Protein Viewer:ENSMUSP00000019248.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019248Re-query CCDS DB by Protein ID:ENSMUSP00000019248
Original member Current member EBI ENSMUST00000108125.8 ENSMUSP00000103760.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108125.8Link to Ensembl Protein Viewer:ENSMUSP00000103760.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108125Re-query CCDS DB by Protein ID:ENSMUSP00000103760
Original member Current member EBI ENSMUST00000186154.6 ENSMUSP00000139685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186154.6Link to Ensembl Protein Viewer:ENSMUSP00000139685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186154Re-query CCDS DB by Protein ID:ENSMUSP00000139685
Original member Current member EBI ENSMUST00000190617.6 ENSMUSP00000139871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190617.6Link to Ensembl Protein Viewer:ENSMUSP00000139871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190617Re-query CCDS DB by Protein ID:ENSMUSP00000139871
Original member Current member EBI ENSMUST00000189718.6 ENSMUSP00000140521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189718.6Link to Ensembl Protein Viewer:ENSMUSP00000140521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189718Re-query CCDS DB by Protein ID:ENSMUSP00000140521
Original member Current member NCBI NM_001043317.2 NP_001036782.1 Accepted alive Link to Nucleotide Sequence:NM_001043317.2Link to Protein Sequence:NP_001036782.1Re-query CCDS DB by Nucleotide ID:NM_001043317Re-query CCDS DB by Protein ID:NP_001036782Link to BLAST:NP_001036782.1
Original member Current member NCBI NM_009845.3 NP_033975.3 Accepted alive Link to Nucleotide Sequence:NM_009845.3Link to Protein Sequence:NP_033975.3Re-query CCDS DB by Nucleotide ID:NM_009845Re-query CCDS DB by Protein ID:NP_033975Link to BLAST:NP_033975.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036782.1 868 P35329-1 868 100% 0 0
NP_033975.3 868 P35329-1 868 100% 0 0

Chromosomal Locations for CCDS 21114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30866531 30866662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30867018 30867102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30867462 30867580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30867782 30867857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30867963 30868059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30869510 30869773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30869856 30870119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30870346 30870603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30872736 30872999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30873135 30873419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30875853 30876173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30877439 30877843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30878050 30878086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2607 nt):
ATGCGCGTCCATTACCTGTGGCTCCTCTTGATCCTAGGACACGTGGCTTCGGCTCGGTACAGCTCAGCAA
AT
GATTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAA
G
TACAAAACTCCACTACCCAAGGCACGTCTGGACAACATCCTCCTTTTTCAGAACTATGAGTTTGACAAG
GCC
ACCAAGAAATTCACAGGAACTGTCCTGTACAACGCCACAAAGACTGAGAAGGACCCAGAGTCTGAGC
TG
TACCTTTCTAAGCAAGGGAGAGTAACATTTCTGGGGAACAGAATAGACAATTGTACCCTGAAAATCCA
C
CCGATACGTGCCAATGACAGTGGGAATCTGGGGTTGAGGATGACCGCAGGGACTGAACGATGGATGGAG
CCC
ATTCACCTCAATGTCTCGGAGAAACCGTTCCAACCTTACATCCAGATGCCATCAGAAATCCGGGAAT
CC
CAAAGTGTCACTCTGACCTGTGGACTGAATTTCTCCTGCTTTGGGTATGACATCCTCTTGAAGTGGTT
C
CTAGAAGATTCTGAGATCACCTCCATCACCTCTTCTGTCACCTCCATCACCTCTTCTGTCACCTCCTCC
ATT
AAGAATGTCTATACAGAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGACCACGGAAAGAGTGTGA
AG
TGCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGTCTGGATGTTAAGTATACCCC
G
AAGCTGGAGATCAAGGTCAATCCCACAGAGGTGGAAAAGAACAATTCTGTGACCATGACATGCCGGGTT
AAC
AGCAGCAACCCGAAACTCAGGACCGTGGCGGTGTCTTGGTTCAAGGATGGGCGCCCCCTAGAGGATC
AG
GAACTGGAACAGGAACAACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA
A
TACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTAT
GCT
CCAGAACCCTCCAGGGTTCACATCTACCCTTCCCCCGCTGAAGAGGGACAGTCAGTAGAGCTGATTT
GT
GAGTCACTGGCCAGTCCAAGTGCAACAAACTACACCTGGTATCACAACAGGAAACCTATACCTGGAGA
C
ACCCAAGAGAAGCTCCGCATCCCTAAAGTCTCCCCGTGGCATGCTGGGAATTACTCTTGCTTGGCAGAG
AAC
CGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAGCTGGATGTCCATTATGCTCCCAAGGCGGTGA
CC
ACAGTGATTCAGAGCTTCACACCAATCCTGGAAGGAGACAGTGTGACCCTGGTCTGTAGGTACAACTC
C
AGCAATCCAGACGTCACCTCCTACAGATGGAACCCTCAAGGTTCTGGGAGTGTGCTCAAACCCGGAGTG
CTG
AGGATTCAGAAAGTGACATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGT
GG
GCCCTCCCTGTCATCCTGAATGTCCACTACGCCCCCAGAGACGTGAAGGTACTGAAGGTAAGCCCCGC
A
TCAGAGATCCGCGCTGGGCAGCGTGTCCTCCTCCAATGCGACTTCGCAGAGAGCAACCCGGCAGAGGTC
CGC
TTCTTCTGGAAGAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCTGAGCTTCGGCTCCGTCTCCC
CA
GAAGATTCTGGAAATTATAACTGCATGGTCAACAACTCCATCGGAGAGACCTTGTCACAGGCCTGGAA
C
CTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATGTGATGGAGGGG
AAG
AAGGCCACCTTGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCA
GT
GGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGAACCCCTGGAGGTCCAACACACGGGTTC
C
TACCGCTGCAAAGGGACCAATGGGATAGGCACAGGAGAGTCACCACCCAGCACCCTCACTGTCTACTAC
AGT
CCAGAGACCATCGGCAAGCGGGTCGCCTTGGGACTAGGCTTCTGCCTGACTATCTGCATCCTGGCCA
TC
TGGGGGATGAAAATCCAGAAAAAATGGAAGCAAAACCGCAGCCAGCAGGGGCTTCAGGAAAATTCCAG
T
GGCCAGAGCTTTTTTGTGAGGAACAAAAAGGCTAGGAGGACCCCTCTCTCAGAAGGCCCCCAATCCCAG
GGA
TGCTACAATCCGGCAATGGATGACACCGTTAGTTATGCCATCTTGCGCTTTCCAGAGAGTGACACGC
AC
AACACTGGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCACTTA
C
TCGGTGATACAGAAGCGGCCTATGGGGGATTATGAGAATGTGAATCCGAGCTGCCCGGAGGATGAGAGC
ATC
CATTACTCAGAGCTGGTTCAGTTTGGGGCTGGTAAGCGGCCCCAGGCAAAGGAAGACGTAGACTATG
TG
ACCCTCAAGCACTGA


Translation (868 aa):
MRVHYLWLLLILGHVASARYSSANDWTVDHPQTLFAWEGACIRIPCKYKTPLPKARLDNILLFQNYEFDK
A
TKKFTGTVLYNATKTEKDPESELYLSKQGRVTFLGNRIDNCTLKIHPIRANDSGNLGLRMTAGTERWME
P
IHLNVS
EKPFQPYIQMPSEIRESQSVTLTCGLNFSCFGYDILLKWFLEDSEITSITSSVTSITSSVTSS
I
KNVYTESKLTFQPKWTDHGKSVKCQVQHSSKVLSERTVRLDVK
YTPKLEIKVNPTEVEKNNSVTMTCRV
N
SSNPKLRTVAVSWFKDGRPLEDQELEQEQQMSKLILHSVTKDMRGKYRCQASNDIGPGESEEVELTVH
Y
A
PEPSRVHIYPSPAEEGQSVELICESLASPSATNYTWYHNRKPIPGDTQEKLRIPKVSPWHAGNYSCLAE
N
RLGHGKIDQEAKLDVH
YAPKAVTTVIQSFTPILEGDSVTLVCRYNSSNPDVTSYRWNPQGSGSVLKPGV
L
RIQKVTWDSMPVSCAACNHKCSWALPVILNVH
YAPRDVKVLKVSPASEIRAGQRVLLQCDFAESNPAEV
R
FFWKKNGSLVQEGRYLSFGSVSPEDSGNYNCMVNNSIGETLSQAWNLQVL
YAPRRLRVSISPGDHVMEG
K
KATLSCESDANPPISQYTWFDSSGQDLHSSGQKLRLEPLEVQHTGSYRCKGTNGIGTGESPPSTLTVY
Y
S
PETIGKRVALGLGFCLTICILAIWGMKIQK
KWKQNRSQQGLQENSSGQSFFVRNKKARRTPLSEGPQSQ
G
CYNPAMDDTVSYAILRFPESDTHNT
GDAGTPATQAPPPNNSDSVTYSVIQKRPMGDYENVNPSCPEDES
I
HYSELVQFGAGKRPQAKEDVDYVTLKH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser