NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24111.1 Public Mus musculus 10 Sycp3 23 108 98 CCDS HistoryNCBI Gene:20962Re-query CCDS DB by CCDS ID:24111.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020252.9 ENSMUSP00000020252.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020252.9Link to Ensembl Protein Viewer:ENSMUSP00000020252.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020252Re-query CCDS DB by Protein ID:ENSMUSP00000020252
Original member Current member NCBI NM_011517.2 NP_035647.2 Accepted alive Link to Nucleotide Sequence:NM_011517.2Link to Protein Sequence:NP_035647.2Re-query CCDS DB by Nucleotide ID:NM_011517Re-query CCDS DB by Protein ID:NP_035647Link to BLAST:NP_035647.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035647.2 254 P70281 254 99.2126% 0 2

Chromosomal Locations for CCDS 24111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88459666 88459712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88462461 88462603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88463363 88463426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88463836 88463870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88466439 88466556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88467283 88467382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88469546 88469644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88472676 88472780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88472905 88472958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCTTCGAGGGTGTGGGGACAGCGACAGCTCACCGGAGCCGCTGAGCAAACATCTAAAGATGGTGCCTG
GTGGAAGAAAGCATTCTGGGAAATCTGGGAAGCCACCTTTGGTTGATCAGCCTAAAAAAGCCTTTGACTT
TGAGAAAGATGATAAAGATCTGTCTGGTTCAGAAGAAGATGTTGCTGATGAAAAGGCTCCAGTAATTGAT
AAACATGGAAAGAAAAGATCTGCTGGGATAATTGAAGATGTTGGAGGTGAAGTACAGAATATGCTGGAAA
AATTTGGAGCTGACATCAACAAAGCTCTTCTTGCCAAGAGGAAAAGAATAGAAATGTATACCAAAGCTTC
TTTCAAAGCCAGTAACCAGAAAATTGAGCAAATTTGGAAAACACAACAAGAGGAAATACAGAAGCTTAAC
AATGAATATTCTCAGCAATTTATGAATGTGTTGCAGCAGTGGGAACTGGATATACAGAAATTTGAGGAAC
AAGGAGAAAAACTATCTAATCTTTTTCGACAACAACAAAAGATTTTTCAGCAGTCTAGAATTGTTCAGAG
CCAGAGAATGAAAGCAATCAAACAGATACACGAGCAGTTCATAAAGAGTTTGGAAGATGTGGAAAAGAAT
AATGATAATCTATTTACTGGCACACAAAGTGAACTTAAAAAAGAAATGGCTATGTTGCAAAAAAAAGTTA
TGATGGAAACTCAGCAGCAAGAGATGGCAAATGTTCGAAAGTCTCTTCAATCCATGTTATTCTGA

Translation (254 aa):
MLRGCGDSDSSPEPLSKHLKMVPGGRKHSGKSGKPPLVDQPKKAFDFEKDDKDLSGSEEDVADEKAPVID
KHGKKRSAGIIEDVGGEVQNMLEKFGADINKALLAKRKRIEMYTKASFKASNQKIEQIWKTQQEEIQKLN
NEYSQQFMNVLQQWELDIQKFEEQGEKLSNLFRQQQKIFQQSRIVQSQRMKAIKQIHEQFIKSLEDVEKN
NDNLFTGTQSELKKEMAMLQKKVMMETQQQEMANVRKSLQSMLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH