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Report for CCDS10886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10886.1 Public Homo sapiens 16 CLEC18A 24 110 108 CCDS HistoryNCBI Gene:348174Re-query CCDS DB by CCDS ID:10886.1Re-query CCDS DB by GeneID:348174See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288040.11 ENSP00000288040.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288040.11Link to Ensembl Protein Viewer:ENSP00000288040.6Re-query CCDS DB by Nucleotide ID:ENST00000288040Re-query CCDS DB by Protein ID:ENSP00000288040
Original member Current member EBI ENST00000393701.6 ENSP00000377304.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393701.6Link to Ensembl Protein Viewer:ENSP00000377304.2Re-query CCDS DB by Nucleotide ID:ENST00000393701Re-query CCDS DB by Protein ID:ENSP00000377304
Original member Current member EBI ENST00000568461.5 ENSP00000454685.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568461.5Link to Ensembl Protein Viewer:ENSP00000454685.1Re-query CCDS DB by Nucleotide ID:ENST00000568461Re-query CCDS DB by Protein ID:ENSP00000454685
Original member Current member EBI ENST00000615430.4 ENSP00000484176.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615430.4Link to Ensembl Protein Viewer:ENSP00000484176.1Re-query CCDS DB by Nucleotide ID:ENST00000615430Re-query CCDS DB by Protein ID:ENSP00000484176
Original member Current member NCBI NM_001136214.4 NP_001129686.1 Accepted alive Link to Nucleotide Sequence:NM_001136214.4Link to Protein Sequence:NP_001129686.1Re-query CCDS DB by Nucleotide ID:NM_001136214Re-query CCDS DB by Protein ID:NP_001129686Link to BLAST:NP_001129686.1
Original member Current member NCBI NM_001271197.3 NP_001258126.1 Accepted alive Link to Nucleotide Sequence:NM_001271197.3Link to Protein Sequence:NP_001258126.1Re-query CCDS DB by Nucleotide ID:NM_001271197Re-query CCDS DB by Protein ID:NP_001258126Link to BLAST:NP_001258126.1
Original member Current member NCBI NM_001370523.4 NP_001357452.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370523.4Link to Protein Sequence:NP_001357452.1Re-query CCDS DB by Nucleotide ID:NM_001370523Re-query CCDS DB by Protein ID:NP_001357452Link to BLAST:NP_001357452.1
Original member Current member NCBI NM_182619.5 NP_872425.2 Accepted alive Link to Nucleotide Sequence:NM_182619.5Link to Protein Sequence:NP_872425.2Re-query CCDS DB by Nucleotide ID:NM_182619Re-query CCDS DB by Protein ID:NP_872425Link to BLAST:NP_872425.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129686.1 446 A5D8T8-1 446 100% 0 0
NP_001258126.1 446 A5D8T8-1 446 100% 0 0
NP_001357452.1 446 A5D8T8-1 446 100% 0 0
NP_872425.2 446 A5D8T8-1 446 100% 0 0

Chromosomal Locations for CCDS 10886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 69951367 69951490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69952035 69952126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69954334 69954573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69958942 69959039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69959460 69959581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69959739 69959846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69960373 69960465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69960845 69960951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69961586 69961715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69961988 69962084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69962976 69963067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69963574 69963611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGCTGCATCCAGAGACCTCCCCTGGCCGGGGGCATCTCCTGGCTGTGCTCCTGGCCCTCCTTGGCACCG
CCTGGGCAGAGGTGTGGCCACCCCAGCTGCAGGAGCAGGCTCCGATGGCCGGAGCCCTGAACAGGAAGGA
GAGTTTCTTGCTCCTCTCCCTGCACAACCGCCTGCGCAGCTGGGTCCAGCCCCCTGCGGCTGACATGCGG
AGGCTGGACTGGAGTGACAGCCTGGCCCAGCTGGCTCAAGCCAGGGCAGCCCTCTGTGGAACCCCAACCC
CGAGCCTGGCGTCCGGCCTGTGGCGCACCCTGCAAGTGGGCTGGAACATGCAGCTGCTACCCGCGGGCTT
GGTGTCCTTTGTCGAAGTGGTCAGCCTATGGTTTGCAGAGGGGCAGCGGTACAGCCACGCGGCAGGAGAG
TGTGCTCGCAACGCCACCTGCACCCACTACACGCAGCTCGTGTGGGCCACCTCAAGCCAGCTGGGCTGTG
GGCGGCACCTGTGCTCTGCAGGCCAGGCAGCGATAGAAGCCTTTGTCTGTGCCTACTCCCCCAGAGGCAA
CTGGGAGGTCAACGGGAAGACAATCGTCCCCTATAAGAAGGGTGCCTGGTGTTCGCTCTGCACAGCCAGT
GTCTCAGGCTGCTTCAAAGCCTGGGACCATGCAGGGGGGCTCTGTGAGGTCCCCAGGAATCCTTGTCGCA
TGAGCTGCCAGAACCATGGACGTCTCAACATCAGCACCTGCCACTGCCACTGTCCCCCTGGCTACACGGG
CAGATACTGCCAAGTGAGGTGCAGCCTGCAGTGTGTGCACGGCCGGTTCCGGGAGGAGGAGTGCTCGTGC
GTCTGTGACATCGGCTACGGGGGAGCCCAGTGTGCCACCAAGGTGCATTTTCCCTTCCACACCTGTGACC
TGAGGATCGACGGAGACTGCTTCATGGTGTCTTCAGAGGCAGACACCTATTACAGAGCCAGGATGAAATG
TCAGAGGAAAGGCGGGGTGCTGGCCCAGATCAAGAGCCAGAAAGTGCAGGACATCCTCGCCTTCTATCTG
GGCCGCCTGGAGACCACCAACGAGGTGATTGACAGTGACTTCGAGACCAGGAACTTCTGGATCGGGCTCA
CCTACAAGACCGCCAAGGACTCCTTCCGCTGGGCCACAGGGGAGCACCAGGCCTTCACCAGTTTTGCCTT
TGGGCAGCCTGACAACCACGGGTTTGGCAACTGCGTGGAGCTGCAGGCTTCAGCTGCCTTCAACTGGAAC
GACCAGCGCTGCAAAACCCGAAACCGTTACATCTGCCAGTTTGCCCAGGAGCACATCTCCCGGTGGGGCC
CAGGGTCCTGA

Translation (446 aa):
MLHPETSPGRGHLLAVLLALLGTAWAEVWPPQLQEQAPMAGALNRKESFLLLSLHNRLRSWVQPPAADMR
RLDWSDSLAQLAQARAALCGTPTPSLASGLWRTLQVGWNMQLLPAGLVSFVEVVSLWFAEGQRYSHAAGE
CARNATCTHYTQLVWATSSQLGCGRHLCSAGQAAIEAFVCAYSPRGNWEVNGKTIVPYKKGAWCSLCTAS
VSGCFKAWDHAGGLCEVPRNPCRMSCQNHGRLNISTCHCHCPPGYTGRYCQVRCSLQCVHGRFREEECSC
VCDIGYGGAQCATKVHFPFHTCDLRIDGDCFMVSSEADTYYRARMKCQRKGGVLAQIKSQKVQDILAFYL
GRLETTNEVIDSDFETRNFWIGLTYKTAKDSFRWATGEHQAFTSFAFGQPDNHGFGNCVELQASAAFNWN
DQRCKTRNRYICQFAQEHISRWGPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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