NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
815.1 Public Homo sapiens 1 EPS8L3 24 110 108 CCDS HistoryNCBI Gene:79574Re-query CCDS DB by CCDS ID:815.1Re-query CCDS DB by GeneID:79574See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 815.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369805.7 ENSP00000358820.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369805.7Link to Ensembl Protein Viewer:ENSP00000358820.3Re-query CCDS DB by Nucleotide ID:ENST00000369805Re-query CCDS DB by Protein ID:ENSP00000358820
Original member Current member NCBI NM_139053.3 NP_620641.1 Accepted alive Link to Nucleotide Sequence:NM_139053.3Link to Protein Sequence:NP_620641.1Re-query CCDS DB by Nucleotide ID:NM_139053Re-query CCDS DB by Protein ID:NP_620641Link to BLAST:NP_620641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620641.1 594 Q8TE67-3 594 100% 0 0

Chromosomal Locations for CCDS 815.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109750391 109750402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109750660 109750792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109751278 109751351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109751654 109751782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109751995 109752193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109752686 109752720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109753117 109753198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109757017 109757165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109757481 109757555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109757802 109757863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109757944 109758058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109758316 109758431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109758524 109758666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109759062 109759117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109759238 109759387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109759678 109759836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109761495 109761559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109761719 109761749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGTCAAGGCCCAGCAGCAGAGCCATTTACTTGCACCGGAAGGAGTACTCCCAGAACCTCACCTCAGAGC
CCACCCTCCTGCAGCACAGGGTGGAGCACTTGATGACATGCAAGCAGGGGAGTCAGAGAGTCCAGGGGCC
CGAGGATGCCTTGCAGAAGCTGTTCGAGATGGATGCACAGGGCCGGGTGTGGAGCCAAGACTTGATCCTG
CAGGTCAGGGACGGCTGGCTGCAGCTGCTGGACATTGAGACCAAGGAGGAGCTGGACTCTTACCGCCTAG
ACAGCATCCAGGCCATGAATGTGGCGCTCAACACATGTTCCTACAACTCCATCCTGTCCATCACCGTGCA
GGAGCCGGGCCTGCCAGGCACTAGCACTCTGCTCTTCCAGTGCCAGGAAGTGGGGGCAGAGCGACTGAAG
ACCAGCCTGCAGAAGGCTCTGGAGGAAGAGCTGGAGCAAAGCAGACCTCGACTTGGAGGCCTTCAGCCAG
GCCAGGACAGATGGAGGGGGCCTGCTATGGAAAGGCCGCTCCCTATGGAGCAGGCACGCTATCTGGAGCC
GGGGATCCCTCCAGAACAGCCCCACCAGAGGACCCTAGAGCACAGCCTCCCACCATCCCCAAGGCCCCTG
CCACGCCACACCAGTGCCCGAGAACCAAGTGCCTTTACTCTGCCTCCTCCAAGGCGGTCCTCTTCCCCCG
AGGACCCAGAGAGGGACGAGGAAGTGCTGAACCATGTCCTAAGGGACATTGAGCTGTTCATGGGAAAGCT
GGAGAAGGCCCAGGCAAAGACCAGCAGGAAGAAGAAATTTGGGAAAAAAAACAAGGACCAGGGAGGTCTC
ACCCAGGCACAGTACATTGACTGCTTCCAGAAGATCAAGCACAGCTTCAACCTCCTGGGAAGGCTGGCCA
CCTGGCTGAAGGAGACAAGTGCCCCTGAGCTCGTACACATCCTCTTCAAGTCCCTGAACTTCATCCTGGC
CAGGTGCCCTGAGGCTGGCCTAGCAGCCCAAGTGATCTCACCCCTCCTCACCCCTAAAGCTATCAACCTG
CTACAGTCCTGTCTAAGCCCACCTGAGAGTAACCTTTGGATGGGGTTGGGCCCAGCCTGGACCACTAGCC
GGGCCGACTGGACAGGCGATGAGCCCCTGCCCTACCAACCCACATTCTCAGATGACTGGCAACTTCCAGA
GCCCTCCAGCCAAGCACCCTTAGGATACCAGGACCCTGTTTCCCTTCGGCGGGGAAGTCATAGGTTAGGG
AGCACCTCACACTTTCCTCAGGAGAAGACACACAACCATGACCCTCAGCCTGGGGACCCCAACTCCAGGC
CCTCCAGCCCCAAACCTGCCCAGCCAGCCCTGAAAATGCAAGTCTTGTACGAGTTTGAAGCTAGGAACCC
ACGGGAACTGACTGTGGTCCAGGGAGAGAAGCTGGAGGTTCTGGACCACAGCAAGCGGTGGTGGCTGGTG
AAGAATGAGGCGGGACGGAGCGGCTACATTCCAAGCAACATCCTGGAGCCCCTACAGCCGGGGACCCCTG
GGACCCAGGGCCAGTCACCCTCTCGGGTTCCAATGCTTCGACTTAGCTCGAGGCCTGAAGAGGTCACAGA
CTGGCTGCAGGCAGAGAACTTCTCCACTGCCACGGTGAGGACACTTGGGTCCCTGACGGGGAGCCAGCTA
CTTCGCATAAGACCTGGGGAGCTACAGATGCTATGTCCACAGGAGGCCCCACGAATCCTGTCCCGGCTGG
AGGCTGTCAGAAGGATGCTGGGGATAAGCCCTTAG

Translation (594 aa):
MSRPSSRAIYLHRKEYSQNLTSEPTLLQHRVEHLMTCKQGSQRVQGPEDALQKLFEMDAQGRVWSQDLIL
QVRDGWLQLLDIETKEELDSYRLDSIQAMNVALNTCSYNSILSITVQEPGLPGTSTLLFQCQEVGAERLK
TSLQKALEEELEQSRPRLGGLQPGQDRWRGPAMERPLPMEQARYLEPGIPPEQPHQRTLEHSLPPSPRPL
PRHTSAREPSAFTLPPPRRSSSPEDPERDEEVLNHVLRDIELFMGKLEKAQAKTSRKKKFGKKNKDQGGL
TQAQYIDCFQKIKHSFNLLGRLATWLKETSAPELVHILFKSLNFILARCPEAGLAAQVISPLLTPKAINL
LQSCLSPPESNLWMGLGPAWTTSRADWTGDEPLPYQPTFSDDWQLPEPSSQAPLGYQDPVSLRRGSHRLG
STSHFPQEKTHNHDPQPGDPNSRPSSPKPAQPALKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLV
KNEAGRSGYIPSNILEPLQPGTPGTQGQSPSRVPMLRLSSRPEEVTDWLQAENFSTATVRTLGSLTGSQL
LRIRPGELQMLCPQEAPRILSRLEAVRRMLGISP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH