NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29020.1 Public Mus musculus 17 Kcnk12 23 108 98 CCDS HistoryNCBI Gene:210741Re-query CCDS DB by CCDS ID:29020.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055221.8 ENSMUSP00000053595.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055221.8Link to Ensembl Protein Viewer:ENSMUSP00000053595.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055221Re-query CCDS DB by Protein ID:ENSMUSP00000053595
Original member Current member NCBI NM_199251.1 NP_954859.1 Accepted alive Link to Nucleotide Sequence:NM_199251.1Link to Protein Sequence:NP_954859.1Re-query CCDS DB by Nucleotide ID:NM_199251Re-query CCDS DB by Protein ID:NP_954859Link to BLAST:NP_954859.1

Chromosomal Locations for CCDS 29020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87745940 87746841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87797064 87797454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGTCCTCCCGCAGCCCCCGGCCCCCGCCCCGCCGCTGCCGCCGCCGCCTGCCGCGCCCCTCCTGCTGCT
GCTGCTGTTGCCGCCGCTCGCACCTCAACGAGGACACCGGCCGCTTCGTGCTGCTGGCGGCGCTCATCGG
CCTCTACCTGGTGGCGGGTGCCACCGTGTTCTCTGCGCTCGAAAGCCCGGGCGAGGCGGAGGCGCGGGCG
CGCTGGGGCGCCACGCTGCGCAACTTCAGCGCTGCGCACGGCGTGGCGGAGCCCGAGCTGCGCGCCTTCC
TCCGGCACTACGAGGCCGCGCTGGCCGCCGGGGTCCGCGCCGACGCGCTGCGCCCGCGCTGGGACTTCCC
TGGAGCCTTCTACTTCGTGGGCACCGTGGTGTCGACCATAGGTTTCGGCATGACAACACCAGCCACAGTG
GGCGGGAAGGCCTTCCTCATCGCCTACGGACTGTTCGGCTGCGCGGGGACCATCTTGTTCTTCAACCTCT
TTCTAGAGCGCATCATCTCGCTGCTGGCCTTCATCATGCGCGCCTGCCGGGAGCGCCAGCTGCGCCGCAG
TGGCCTGCTGCCCGCCACCTTCCGCCGCGGCTCGGCGCTGTCGGAGGCCGACAGCCTGGCGGGCTGGAAG
CCCTCGGTGTACCACGTGCTGCTCATCCTGGGCCTGTTCGCCGTGCTGCTGGCCTGTTGCGCCTCGGCCA
TGTACACCAGCGTGGAAGGCTGGGACTACGTGGACTCGCTCTACTTCTGCTTCGTCACCTTCAGCACCAT
CGGCTTCGGGGACCTGGTGAGCAGCCAACACGCCGCCTACCGGAACCAGGGGCTCTACCGCCTGGGCAAC
TTCCTCTTCATCCTGCTCGGCGTGTGCTGCATCTACTCGCTCTTCAACGTCATCTCCATCCTCATCAAGC
AGGTGCTCAACTGGATGCTGCGCAAGCTGAGCTGCCGCTGCTGCACGCGCTGCTGCCCGGCTCCCGGCGC
GCCCCTAGCCCGGCGCAACGCCATCACCCCGGGCTCCCGGCTGCGCCGTCGCCTGGCCGCGCTGGGTGCC
GACCCCGCGACTCGCGACAGCGATGCCGAGGGCCGCCGCCTGTCGGGCGAGCTCATCTCTATGCGCGACC
TCACGGCGTCCAACAAGGTGTCGCTGGCGCTGCTGCAGAAGCAGCTGTCCGAGACGGCCAACGGCTACCC
GCGCAGCGTGTGCGTCAACACGCGACAGAACGGCTTCTCGGGCGGCGTGGGCGCGCTGGGCATCATGAAC
AACCGGCTGGCAGAGACCAGCGCCTCCAGGTAG

Translation (430 aa):
MSSRSPRPPPRRCRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSALESPGEAEARA
RWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAFYFVGTVVSTIGFGMTTPATV
GGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACRERQLRRSGLLPATFRRGSALSEADSLAGWK
PSVYHVLLILGLFAVLLACCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGN
FLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCTRCCPAPGAPLARRNAITPGSRLRRRLAALGA
DPATRDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMN
NRLAETSASR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH