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Report for CCDS36726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36726.1 Public Mus musculus 13 Lpcat1 23 108 98 CCDS HistoryNCBI Gene:210992Re-query CCDS DB by CCDS ID:36726.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022099.14 ENSMUSP00000022099.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022099.14Link to Ensembl Protein Viewer:ENSMUSP00000022099.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022099Re-query CCDS DB by Protein ID:ENSMUSP00000022099
Original member Current member NCBI NM_145376.6 NP_663351.3 Accepted alive Link to Nucleotide Sequence:NM_145376.6Link to Protein Sequence:NP_663351.3Re-query CCDS DB by Nucleotide ID:NM_145376Re-query CCDS DB by Protein ID:NP_663351Link to BLAST:NP_663351.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663351.3 534 Q3TFD2-1 534 100% 0 0

Chromosomal Locations for CCDS 36726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73467383 73467517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73484261 73484403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73488887 73489101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73494802 73494914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73496180 73496240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73499299 73499357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73501356 73501390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73503041 73503095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73505502 73505584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73509996 73510121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73510848 73511001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73511300 73511398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73513820 73513961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73514354 73514538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGAGGCTGCGGGGCCGCGGGCCGCGGGCCGCCCCCTCCTCCAGCTCTGGGGCAGGCGACGCGCGGCGCC
TAGCGCCCCCGGGGCGGAACCCCTTCGTGCACGAGCTGCGACTGAGCGCCCTGCAGAAGGCCCAGGTGGC
TTTCATGACGTTGACGCTGTTCCCCATCCGGCTCCTGTTCGCTGCTTTCATGATGCTGCTGGCCTGGCCC
TTTGCACTCCTGGCTTCCCTGGGACCTCCTGATAAGGAGCCAGAGCAGCCCCTGGCCTTATGGAGGAAGG
TCGTGGACTTCCTGCTCAAGGCCATCATGCGCACCATGTGGTTTGCTGGCGGCTTCCACCGTGTAGCTGT
GAAGGGGCGGCAGGCCCTGCCTACTGAGGCTGCTATCCTCACCTTGGCTCCACATTCCTCCTACTTTGAT
GCCATCCCGGTCACCATGACCATGTCCTCCATTGTGATGAAGGCAGAGAGCAGAGACATCCCAATCTGGG
GAACTCTGATAAGATACATCAGGCCAGTGTTCGTGTCCCGCTCTGACCAGGACTCGCGAAGGAAGACAGT
GGAGGAGATCAAGCGACGGGCACAGTCGAATGGAAAGTGGCCTCAGATAATGATTTTTCCAGAAGGAACT
TGTACAAATAGGACCTGCCTCATTACCTTCAAACCTGGTGCGTTCATTCCTGGAGTTCCTGTCCAGCCCG
TGGTGCTACGCTACCCAAACAAATTGGACACCATCACATGGACGTGGCAAGGACCTGGAGCGTTGAAAAT
CCTGTGGCTCACTCTGTGCCAGTTTCAAAACCAAGTGGAAATTGAATTTCTGCCTGTGTATTGCCCTTCT
GAAGAGGAGAAGAGGAATCCTGCCCTGTATGCCAGCAATGTGAGGCGTGTCATGGCCAAGGCCCTGGGTG
TCTCAGTAACCGACTATACATTTGAGGACTGCCAGCTGGCTCTGGCAGAAGGACAACTTCGCTTGCCTGC
TGACACCTGCCTGCTAGAGTTTGCCAGGCTTGTGAGGGGCCTCGGACTAAAACCAGAAAATCTTGAAAAA
GATCTAGACAAATATTCAGAAAGTGCGAGGATGAAGAGAGGAGAGAAAATCCGCCTTCCAGAGTTTGCGG
CCTACTTGGAAGTTCCTGTCTCAGATGCACTGGAAGACATGTTCTCGCTTTTTGACGAGAGTGGTGGTGG
TGAGATTGACCTTCGTGAATATGTGGTCGCCTTGTCTGTGGTGTGCAGGCCATCCCAGACCTTAGCCACC
ATCCAGCTGGCATTCAAGATGTACGGATCTCCTGAGGATGGCAGCATAGATGAGGCCAACCTGTCCTGCA
TCCTCAAGACTGCACTGGGTGTATCAGAATTAACAGTGACCGACTTGTTCCAGGCTATTGACCAAGAGGA
CAAGGGAAGAATCACCTTTGATGACTTCTGCGGGTTTGCGGAAATGTACCCCGACTACGCAGAGGACTAC
TTGTACCCTGATCAGACACATTTCGACAGCTGTGCACAGACACCCCCAGCACCAACTCCCAATGGCTTCT
GCATTGACTTCAGCCCTGAGAACTCAGACTTTGGGAGAAAGAATTCTTGTAAGAAAGCGGACTAG

Translation (534 aa):
MRLRGRGPRAAPSSSSGAGDARRLAPPGRNPFVHELRLSALQKAQVAFMTLTLFPIRLLFAAFMMLLAWP
FALLASLGPPDKEPEQPLALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGRQALPTEAAILTLAPHSSYFD
AIPVTMTMSSIVMKAESRDIPIWGTLIRYIRPVFVSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGT
CTNRTCLITFKPGAFIPGVPVQPVVLRYPNKLDTITWTWQGPGALKILWLTLCQFQNQVEIEFLPVYCPS
EEEKRNPALYASNVRRVMAKALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPENLEK
DLDKYSESARMKRGEKIRLPEFAAYLEVPVSDALEDMFSLFDESGGGEIDLREYVVALSVVCRPSQTLAT
IQLAFKMYGSPEDGSIDEANLSCILKTALGVSELTVTDLFQAIDQEDKGRITFDDFCGFAEMYPDYAEDY
LYPDQTHFDSCAQTPPAPTPNGFCIDFSPENSDFGRKNSCKKAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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