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Report for CCDS38628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38628.1 Public Mus musculus 3 Tifa 23 108 98 CCDS HistoryNCBI Gene:211550Re-query CCDS DB by CCDS ID:38628.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054483.13 ENSMUSP00000054036.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054483.13Link to Ensembl Protein Viewer:ENSMUSP00000054036.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054483Re-query CCDS DB by Protein ID:ENSMUSP00000054036
Original member Current member EBI ENSMUST00000164447.2 ENSMUSP00000126692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164447.2Link to Ensembl Protein Viewer:ENSMUSP00000126692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164447Re-query CCDS DB by Protein ID:ENSMUSP00000126692
Original member Current member EBI ENSMUST00000171621.2 ENSMUSP00000127700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171621.2Link to Ensembl Protein Viewer:ENSMUSP00000127700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171621Re-query CCDS DB by Protein ID:ENSMUSP00000127700
Original member Current member EBI ENSMUST00000163775.5 ENSMUSP00000132309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163775.5Link to Ensembl Protein Viewer:ENSMUSP00000132309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163775Re-query CCDS DB by Protein ID:ENSMUSP00000132309
Original member Current member NCBI NM_001356430.1 NP_001343359.1 Accepted alive Link to Nucleotide Sequence:NM_001356430.1Link to Protein Sequence:NP_001343359.1Re-query CCDS DB by Nucleotide ID:NM_001356430Re-query CCDS DB by Protein ID:NP_001343359Link to BLAST:NP_001343359.1
Original member Current member NCBI NM_145133.4 NP_660115.1 Accepted alive Link to Nucleotide Sequence:NM_145133.4Link to Protein Sequence:NP_660115.1Re-query CCDS DB by Nucleotide ID:NM_145133Re-query CCDS DB by Protein ID:NP_660115Link to BLAST:NP_660115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343359.1 184 Q793I8 184 100% 0 0
NP_660115.1 184 Q793I8 184 100% 0 0

Chromosomal Locations for CCDS 38628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127796582 127797136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGTCCACCTTTGAAGACGCTGATACAGAGGAGACGGTCACTTGTCTCCAGATGACCATTTACCATCCTG
GCCAACAAAGTGGGATATTTAAATCAATAAGGTTTTGCAGCAAAGAGAAGTTTCCTTCCATTGAAGTGGT
GAAATTTGGACGCAATTCCAACATGTGCCAGTATACGTTTCAGGACAAACAGGTGTCCCGAATTCAGTTT
GTTTTACAGCCGTTTAAACAGTTCAACAGCTCCGTTCTCTCGTTTGAAATAAAAAACATGAGCAAGAAAA
CCAGTTTGATGGTAGACAACCAGGAGCTCGGCTACCTCAATAAAATGGACCTGCCTTACAAGTGTATGCT
CAGGTTCGGAGAGTATCAGTTCCTGTTGCAGAAGGAAGACGGAGAGTCGGTGGAATCTTTTGAGACTCAA
TTTATCATGTCTTCAAGACCTCTCTTGCAAGAAAACAACTGGCCAACACAGAATCCCATACCAGAGGATG
GGATGTATTCTTCATACTTCACCCACAGAAGTTCTCCTTCAGAAATGGATGAAAACGAACTGTGA

Translation (184 aa):
MSTFEDADTEETVTCLQMTIYHPGQQSGIFKSIRFCSKEKFPSIEVVKFGRNSNMCQYTFQDKQVSRIQF
VLQPFKQFNSSVLSFEIKNMSKKTSLMVDNQELGYLNKMDLPYKCMLRFGEYQFLLQKEDGESVESFETQ
FIMSSRPLLQENNWPTQNPIPEDGMYSSYFTHRSSPSEMDENEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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