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Report for CCDS16503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16503.1 Public Mus musculus 2 Arl14ep 23 108 98 CCDS HistoryNCBI Gene:212772Re-query CCDS DB by CCDS ID:16503.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028536.12 ENSMUSP00000028536.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028536.12Link to Ensembl Protein Viewer:ENSMUSP00000028536.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028536Re-query CCDS DB by Protein ID:ENSMUSP00000028536
Original member Current member EBI ENSMUST00000093883.3 ENSMUSP00000091409.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093883.3Link to Ensembl Protein Viewer:ENSMUSP00000091409.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093883Re-query CCDS DB by Protein ID:ENSMUSP00000091409
Original member Current member NCBI NM_001025102.2 NP_001020273.1 Accepted alive Link to Nucleotide Sequence:NM_001025102.2Link to Protein Sequence:NP_001020273.1Re-query CCDS DB by Nucleotide ID:NM_001025102Re-query CCDS DB by Protein ID:NP_001020273Link to BLAST:NP_001020273.1
Original member Current member NCBI NM_001362864.1 NP_001349793.1 Accepted alive Link to Nucleotide Sequence:NM_001362864.1Link to Protein Sequence:NP_001349793.1Re-query CCDS DB by Nucleotide ID:NM_001362864Re-query CCDS DB by Protein ID:NP_001349793Link to BLAST:NP_001349793.1
Original member Current member NCBI NM_001362865.1 NP_001349794.1 Accepted alive Link to Nucleotide Sequence:NM_001362865.1Link to Protein Sequence:NP_001349794.1Re-query CCDS DB by Nucleotide ID:NM_001362865Re-query CCDS DB by Protein ID:NP_001349794Link to BLAST:NP_001349794.1
Original member Current member NCBI NM_173750.2 NP_776111.1 Accepted alive Link to Nucleotide Sequence:NM_173750.2Link to Protein Sequence:NP_776111.1Re-query CCDS DB by Nucleotide ID:NM_173750Re-query CCDS DB by Protein ID:NP_776111Link to BLAST:NP_776111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020273.1 276 Q8BIX3-1 276 100% 0 0
NP_001349793.1 276 Q8BIX3-1 276 100% 0 0
NP_001349794.1 276 Q8BIX3-1 276 100% 0 0
NP_776111.1 276 Q8BIX3-1 276 100% 0 0

Chromosomal Locations for CCDS 16503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 106964816 106964870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106965422 106965646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106967100 106967227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 106969072 106969494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGATCCGTGTTCAGTTGGAGTCCAGCTTCGTACCACACACGACTGCCATAAAACCTTCTATACTCGGC
ACACAGGTTTCAAGACATTGAAAGAATTGTCATCAAATGACATGCTTTTACTTCAGCTTAGAACTGGAAT
GACACTTTCTGGGAATAATACAATTTGTCTCCATCACGTAAAAATTTATATTGACAGATTTGAAGATTTG
CAGAAGTCGTGTTGTGACCCATTTAACATACACAAGAAGCTAGCCAAAAAGAACCTGCACGTCATTGACT
TAGATGATGCCACTTTTCTGAGCGCCAAGTTTGGAAGACAGCTTGTACCTGGTTGGAAGCTTTGCCCCAA
ATGTACCCAGATCATCAATGGAAGTGTGGACGTTGATTCAGATGACCGCCAGAGACGGAAACCCGACTCA
GATGGAAGGACTGCTAAAGCTCTGAGGTCACTACAGTTTACAAACCCAGGGAAGCAAACTGAATTTGCTC
CAGAAGGCGGTAAGAGGGAGAAAAGAAAGCTCACCAAAGCCACAAGCGCTGCTTCTGACAGACAAATTAT
TCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGTGGCATGGACCTCTGCGACTGC
CTGGACGAGGACTGCTTGGGATGCTTCTACGCTTGCCCCACTTGTGGCTCTACCAAATGTGGGGCTGAGT
GCCGCTGCGACCGAAAGTGGCTGTATGAGCAGATAGAGATTGAAGGAGGAGAGATAATCCATAATAAACA
TGCTGGAAAAGCATATGGTCTGTTATCTCCCTGTCACCCATATGATATTTTACAAAAATGA

Translation (276 aa):
MDPCSVGVQLRTTHDCHKTFYTRHTGFKTLKELSSNDMLLLQLRTGMTLSGNNTICLHHVKIYIDRFEDL
QKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDVDSDDRQRRKPDS
DGRTAKALRSLQFTNPGKQTEFAPEGGKREKRKLTKATSAASDRQIIPAKSKVYDSQGLLIFSGMDLCDC
LDEDCLGCFYACPTCGSTKCGAECRCDRKWLYEQIEIEGGEIIHNKHAGKAYGLLSPCHPYDILQK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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