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Report for CCDS15278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15278.1 Public Mus musculus 1 Slc45a3 23 108 98 CCDS HistoryNCBI Gene:212980Re-query CCDS DB by CCDS ID:15278.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027695.7 ENSMUSP00000027695.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027695.7Link to Ensembl Protein Viewer:ENSMUSP00000027695.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027695Re-query CCDS DB by Protein ID:ENSMUSP00000027695
Original member Current member EBI ENSMUST00000177943.7 ENSMUSP00000136190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177943.7Link to Ensembl Protein Viewer:ENSMUSP00000136190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177943Re-query CCDS DB by Protein ID:ENSMUSP00000136190
Original member Current member NCBI NM_001177628.2 NP_001171099.1 Accepted alive Link to Nucleotide Sequence:NM_001177628.2Link to Protein Sequence:NP_001171099.1Re-query CCDS DB by Nucleotide ID:NM_001177628Re-query CCDS DB by Protein ID:NP_001171099Link to BLAST:NP_001171099.1
Original member Current member NCBI NM_145977.2 NP_666089.1 Accepted alive Link to Nucleotide Sequence:NM_145977.2Link to Protein Sequence:NP_666089.1Re-query CCDS DB by Nucleotide ID:NM_145977Re-query CCDS DB by Protein ID:NP_666089Link to BLAST:NP_666089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171099.1 553 Q8K0H7 553 100% 0 0
NP_666089.1 553 Q8K0H7 553 100% 0 0

Chromosomal Locations for CCDS 15278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131976941 131977112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131977413 131978198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131978748 131979013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131981291 131981728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGATCCAGAGGCTGTGGGCCAGCCGTCTGCTACGGCACCGGAAAGCTCAGCTCCTGCTGGTCAACCTGC
TCACCTTTGGCCTGGAGGTGTGCCTGGCTGCCGGCATTACCTATGTGCCACCCCTTCTGCTGGAAGTCGG
GGTGGAGGAGAAATTCATGACCATGGTGTTGGGCATTGGCCCAGTGCTAGGCCTGGTTTCTGTTCCACTC
CTAGGCTCAGCCAGTGACCAGTGGCGTGGGCGCTATGGCCGCCGGAGACCCTTTATCTGGGCTTTGTCCC
TGGGTGTCCTGCTAAGCCTCTTTCTCATCCCGAGGGCTGGCTGGCTGGCAGGACTGCTGTACCCAGACAC
CAGGCCCCTGGAGTTGGCCCTGCTGATCTTGGGAGTGGGGCTGCTGGACTTTTGTGGCCAGGTGTGCTTT
ACTCCATTGGAGGCCTTACTCTCCGACCTCTTCCGGGACCCAGACCACTGCCGCCAAGCCTTCTCTGTCT
ACGCCTTCATGATCAGCCTTGGGGGCTGCCTGGGCTACCTCTTACCTGCCATTGACTGGGACACCAGCGT
TCTGGCCCCCTACCTGGGTACTCAGGAAGAATGCCTCTTTGGCCTCCTCACCCTCATTTTCCTCATCTGC
ATGGCAGCCACTCTGTTTGTGACGGAGGAGGCAGTACTGGGCCCACCCGAGCCGGCAGAAGGGTTGTTGG
TCTCTGCCGTGTCGCGCCGATGCTGCCCATGCCACGTTGGCCTGGCTTTCCGGAATCTGGGTACCCTGTT
TCCCCGGCTGCAGCAGCTGTGCTGCCGCATGCCTCGCACCCTACGCCGACTCTTTGTGGCTGAGCTGTGC
AGCTGGATGGCACTTATGACTTTCACACTGTTCTACACGGACTTCGTGGGAGAGGGGCTGTACCAGGGTG
TACCCAGAGCCGAGCCAGGCACCGAGGCCCGGAGACACTATGATGAAGGCATTCGAATGGGCAGCCTGGG
GCTCTTCCTGCAGTGTGCCATCTCCCTGGTCTTCTCCCTGGTCATGGACAGGCTGGTACAGAAGTTCGGC
ACACGGTCAGTCTATCTGGCCAGTGTGATGACCTTTCCTGTGGCTGCCGCTGCCACCTGCCTGTCCCACA
GCGTGGTGGTAGTGACAGCCTCAGCTGCCCTCACCGGGTTCACCTTCTCGGCCTTGCAGATCCTGCCTTA
CACGCTCGCCTCCCTCTACCACCGTGAGAAGCAGGTGTTCCTGCCCAAATACCGAGGGGACGCTGGAGGT
AGCAGCGGTGAGGACAGCCAGACAACCAGCTTCTTGCCAGGCCCTAAGCCAGGAGCTCTCTTCCCCAATG
GACACGTGGGCTCTGGCAGCAGCGGCATCCTGGCCCCTCCACCTGCACTCTGTGGGGCCTCTGCCTGCGA
TGTCTCCATGCGAGTGGTGGTGGGTGAGCCACCTGAGGCCAGGGTTGTTACGGGACGGGGCATTTGCCTG
GACCTGGCCATTCTGGACAGTGCCTTTCTGCTGTCCCAGGTGGCTCCGTCCCTGTTCATGGGCTCCATTG
TCCAGCTGAGCCACTCTGTCACTGCCTATATGGTATCAGCTGCAGGCTTGGGTCTGGTCGCCATTTACTT
TGCTACACAGGTAGTGTTTGACAAGAACGACTTGGCCAAATACTCAGTGTAG

Translation (553 aa):
MIQRLWASRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLLEVGVEEKFMTMVLGIGPVLGLVSVPL
LGSASDQWRGRYGRRRPFIWALSLGVLLSLFLIPRAGWLAGLLYPDTRPLELALLILGVGLLDFCGQVCF
TPLEALLSDLFRDPDHCRQAFSVYAFMISLGGCLGYLLPAIDWDTSVLAPYLGTQEECLFGLLTLIFLIC
MAATLFVTEEAVLGPPEPAEGLLVSAVSRRCCPCHVGLAFRNLGTLFPRLQQLCCRMPRTLRRLFVAELC
SWMALMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGIRMGSLGLFLQCAISLVFSLVMDRLVQKFG
TRSVYLASVMTFPVAAAATCLSHSVVVVTASAALTGFTFSALQILPYTLASLYHREKQVFLPKYRGDAGG
SSGEDSQTTSFLPGPKPGALFPNGHVGSGSSGILAPPPALCGASACDVSMRVVVGEPPEARVVTGRGICL
DLAILDSAFLLSQVAPSLFMGSIVQLSHSVTAYMVSAAGLGLVAIYFATQVVFDKNDLAKYSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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